Jatropha Genome Database
- JcCA0004811.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0004811.20 + phase: 0 /TE
(1379 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 251 2e-66
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 249 6e-66
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 227 4e-59
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 225 1e-58
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 192 1e-48
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 182 8e-46
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 182 1e-45
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 156 5e-38
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 152 9e-37
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 152 1e-36
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 143 5e-34
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 143 7e-34
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 131 3e-30
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 121 3e-27
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 120 7e-27
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 101 3e-21
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 99 2e-20
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 96 1e-19
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 95 2e-19
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 89 2e-17
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 80 1e-14
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 74 3e-13
IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H f... 69 2e-11
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 64 7e-10
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 62 2e-09
IMGA|Medtr4g104320.1 hypothetical protein chr04_pseudomolecule_I... 61 3e-09
IMGA|Medtr3g044280.1 hypothetical retrotransposon, related chr03... 61 5e-09
IMGA|Medtr5g082230.1 hypothetical retrotransposon, related chr05... 61 5e-09
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 55 3e-07
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 54 5e-07
IMGA|Medtr8g128700.1 Integrase, catalytic region chr08_pseudomol... 54 6e-07
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 51 3e-06
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 199/732 (27%), Positives = 327/732 (44%), Gaps = 74/732 (10%)
Query: 308 TWWLDSSATTHVSHIIQGFLLIQPINEIEKFLFMGNRMKARIKGIGTYRLILDTSCYLDL 367
+W +DS A HV F I + L G + G + + YL L
Sbjct: 350 SWIIDSGANDHVCFSKTHFTSFYKIKPVLVTLPNGTSIYVHYAGNVHF------TPYLHL 403
Query: 368 EKCLYVPECDRNLVSIGRL-DNVGFSFKICNDIFSIYKL--KYYYGSCTLIDGLYRFNLD 424
LY PE NL+S+ ++ D++ S ++ I + + G DGLY+ L
Sbjct: 404 THVLYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYK--LS 461
Query: 425 AEFIESLFNVEHNT----GNKCSAHNECS--------------------AFLWHQRLGHI 460
F+ + HN+ NK AH+ C+ + LWH RLGH+
Sbjct: 462 MHFVNQQLQL-HNSFKPLPNKV-AHSACNISTSSLSKSSTVFYSSRIPESALWHFRLGHL 519
Query: 461 FKESILRLVKCEILPQLDFTDWDVCIDCIKGKQTKHTLKNPATRNSELLELIHTDICGPF 520
+ + + + + P + + C C + K + ++ + +L+H DI GP
Sbjct: 520 SNQRLSTMSR--LYPSIIVDNKAACDICHFARHKKLPFPHSSSHANSKFQLLHFDIWGPL 577
Query: 521 DVPSWGGEKYFITFIDDFSRYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRG 580
+ G KYF+T +DD +R+ ++ LL K + ++ FI +E Q + K++R+D G
Sbjct: 578 AINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITPKIIRTDNG 637
Query: 581 GEYYGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNC 640
E+ F+ S+GI + TPQQNG ER+++ ++ + R++L
Sbjct: 638 SEFL------------LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQS 685
Query: 641 TVPLSLWMHGLKTAAYLLNRVPSKAVP-KTPYELWTGRKPSLRHLHVWGCPAEVRIYNPH 699
+PLS W + A +L+NRVP+ + ++PY+L P + V+GC H
Sbjct: 686 KLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSH 745
Query: 700 EKKIDARMVSGFFIGYPEKPKGYKFYYPNHSTRIVESGNARFIENGQISGSSKLRKVNVQ 759
K++ R F+GY KG Y H+ I S + F E S+ + +
Sbjct: 746 RTKLETRARKSVFLGYKSGFKG-SVLYDLHTREIFISRHVVFHECVLPYKSNSSPQSHDW 804
Query: 760 EIQIENPTQMDFPNVSSLDVVPLIVSWFNNMVKQQNNLNPQNDHINDEP-------ANNE 812
E T +D P S D P S ++V + I D P ++
Sbjct: 805 EYFTSFSTPLDLP--SGTDTSPH--SAITDIVPYTSPTPTSTSSIIDIPPPLPTRHSSRN 860
Query: 813 QFTNDQVVXXXXXXXXXXXXXXXXXXXDYVVY---SLEHE---CELSIDKDPISFQKAME 866
+ + ++V Y S H L +P S+ E
Sbjct: 861 KTPPSYLKDFICANKSSASVNSLHSISNFVSYHNISNSHSHFILSLHAHTEPKSY---TE 917
Query: 867 CDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSKGKIEKYKARVV 926
+ E W AM+ E+ ++ + W +++LP +K +GC+W++K K + G IE+YKAR+V
Sbjct: 918 ANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADGTIERYKARLV 977
Query: 927 AKDYTQKDGIDYKETFSPVSKKDSLIIILALVAHYDLELHQMDVKTTFLNGDLEEEVYMD 986
AK Y Q +G+DY +T+SPV+K ++ ++LAL + + LHQ+DV FL+GDL+E+VYMD
Sbjct: 978 AKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHGDLQEDVYMD 1037
Query: 987 QPEGFVVTGKEN 998
P G V T K N
Sbjct: 1038 IPPG-VSTNKPN 1048
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 249 bits (636), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 203/753 (26%), Positives = 328/753 (43%), Gaps = 142/753 (18%)
Query: 307 NTWWLDSSATTHVSHIIQGFLLIQPINEIEKFLFMGNRMKARIKGIGTYRLILDTSCYLD 366
+ W+LDS A H+ F IN K + + N ++ GT + +
Sbjct: 379 DVWFLDSGANEHIVSSTHWFTSFHKINP--KPVNLPNGTSVLVEYAGTIHF----TPHFY 432
Query: 367 LEKCLYVPECDRNLVSIGRLDNVGFSFKICNDIFSIYKLKYYYGSCTLIDGLYRFNLDAE 426
+E LY P NL+SI FK+C+ + + Y S F+
Sbjct: 433 IEDVLYSPSFTLNLISI---------FKVCSSL-------HCYAS---------FHDKKC 467
Query: 427 FIESLFNVEHNTGNKCSAHNECSAFLWH---QRLGHIFKESILRLVKCEILPQLDFTDWD 483
F++ L ++ + L H +RL H+ + P L +
Sbjct: 468 FLQDL-----HSQKMIGLGEQVRGLLGHVSNKRLNHM----------SHLYPTLTVDNHA 512
Query: 484 VCIDCIKGKQTKHTLKNPATRNSELLELIHTDICGPFDVPSWGGEKYFITFIDDFSRYDF 543
C C KQ K + + S EL+H DI GP V S +YF+T +DD+S + +
Sbjct: 513 TCDICQFAKQKKLSFPTSVSVASSKFELLHFDIWGPLAVTSIHNHRYFLTILDDYSIFFW 572
Query: 544 LYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPFAKFFES 603
+ LL K + ++ FIN + Q + KVVRSD G E+ F+ S
Sbjct: 573 IVLLKSKYEVSQHVKNFINLIHTQYHITPKVVRSDNGPEFL------------LNSFYAS 620
Query: 604 RGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYLLNRVPS 663
+GI + TPQQNG ER+++ ++ + R++L +P S W + L A +++NRV S
Sbjct: 621 KGIVHHKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPSSYWSYALLHAIFIINRVTS 680
Query: 664 KAVP-KTPYELWTGRKPSLRHLHVWGCPAEVRIYNPHEKKIDARMVSGFFIGYPEKPKGY 722
+ K+PY+L G P ++ V+G H K+ AR F+GY KGY
Sbjct: 681 PTLHNKSPYQLLHGTIPDVQTFKVFGSLCYSTTLQSHRTKLSARARKTVFLGYAVGYKGY 740
Query: 723 ----------------KFY-----YPNHSTRIVESGNARFIENGQISGSSKLRKVNVQEI 761
+F+ YP + + I + + + + S S+ L K +
Sbjct: 741 VLLDIHTREIHISRHVQFHEHILPYPTNPSTITTTWD--YFSSDSCSASNPLPKSSTISP 798
Query: 762 -------QIENPTQMDFPNVSSLDVVPLIVSWFNNMVKQQNNLNPQNDHINDEPANNEQF 814
++ P D +VS + P+I ++ + + H+ D +
Sbjct: 799 IIPPPFIDVDTPPSDDNHSVSPIPQPPVI--------RKSSRITQPPTHLQDYVCSVSDD 850
Query: 815 TNDQVVXXXXXXXXXXXXXXXXXXXDYVVYSLEH----------ECELSIDKD----PIS 860
T+ +V Y + H C ++ D P +
Sbjct: 851 TS------------------------FVQYPISHYLSYNNLSSSHCAFALSLDSHTEPTT 886
Query: 861 FQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSKGKIEK 920
+ +A + D W AM+ E+ ++ + W LV+LP K + C+W++K K + G IE+
Sbjct: 887 YAEASKFDC---WKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHADGSIER 943
Query: 921 YKARVVAKDYTQKDGIDYKETFSPVSKKDSLIIILALVAHYDLELHQMDVKTTFLNGDLE 980
YKAR+VAK Y Q +G+DY +T+SPV+K ++ I+AL + +HQ+DV FL+GDL+
Sbjct: 944 YKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFLHGDLQ 1003
Query: 981 EEVYMDQPEGFVVTGKENLVCKFKKSIYGLKQA 1013
E+VYM P+G + K N VCK KS+YGLKQA
Sbjct: 1004 EDVYMIVPQG-ITPSKSNQVCKLIKSLYGLKQA 1035
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 227 bits (578), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 166/544 (30%), Positives = 243/544 (44%), Gaps = 98/544 (18%)
Query: 501 PATRNSE-LLELIHTDICGPFDVPSWGGEKYFITFIDDFSRYDFLYLLHEKNQSVDILEI 559
P T + + EL+H DI GP+ + KYFIT +DDFS+ + LL K+ + +L+
Sbjct: 11 PKTHTTTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSCKSNAFHVLKA 70
Query: 560 FINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQQN 619
FI VE Q + VK +RSD G E+ NE FF+S+GI + P TPQQN
Sbjct: 71 FILMVENQFSTTVKTIRSDNGLEFTS--NET-------TLFFQSKGIIHQKSCPYTPQQN 121
Query: 620 GVAERQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYLLNRVPSKAVPKTPYELWTGRKP 679
GV ER+++ ++E R++L +P+ W
Sbjct: 122 GVVERKHKFILETARALLFQSKLPVKYW-------------------------------- 149
Query: 680 SLRHLHVWGCPAEVRIYNPHEKKIDARMVSGFFIGYPEKPKGYKFYYPNHST-RIVESGN 738
+E H K D + + F+GYP KGYK N ST +I S +
Sbjct: 150 -----------SEF-----HRTKFDPKTIPHVFVGYPYATKGYKVL--NLSTQKIHVSRD 191
Query: 739 ARFIEN----GQISGSSKLRKVNVQEIQIEN-PTQMDFPNVSSLDVVPLIVSWFNNMVKQ 793
F E + K + + + PT D + SS +
Sbjct: 192 VIFHETIFPFAMSKDPTHFPKFPFHCVSLHDYPTSYDDQDYSSKETTTSPTHITPENSTS 251
Query: 794 QNNLNPQN---------------------DHINDEPANNEQFTNDQVVXXXXXXXXXXXX 832
++ P+N D++++ P++ +N Q
Sbjct: 252 PTHITPENSTSIPQLRRSQRLHKTPTYLTDYVHNVPSST--VSNSQPPQPHSLPLNALFT 309
Query: 833 XXXXXXXDYVVYSLEHEC---ELSIDKDPISFQKAMECDNSEKWFNAMKEEMQSMSDNQV 889
D V+S + + +S D +P S++ E W AM +E ++ DN
Sbjct: 310 LKHYVSPD--VFSFDSQSFIMNISHDCEPNSYE---EASMDPAWQKAMTQEFLALHDNNT 364
Query: 890 WDLVELPEGSKQVGCKWVFKTKXDSKGKIEKYKARVVAKDYTQKDGIDYKETFSPVSKKD 949
W L LP+ K VGC+WV+K K + G +E+YKAR+V K YTQ GIDY ETFSPV K
Sbjct: 365 WTLTNLPKDKKSVGCRWVYKVKHKADGSVERYKARLVVKGYTQHHGIDYTETFSPVVKMT 424
Query: 950 SLIIILALVAHYDLELHQMDVKTTFLNGDLEEEVYMDQPEGFVVTGKENLVCKFKKSIYG 1009
++ ++ A +HQ+DV FL+GDL EEVYMD P G + T ++LVCK KS+YG
Sbjct: 425 TVRTLIVAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPG-LATPHKDLVCKLNKSLYG 483
Query: 1010 LKQA 1013
LKQA
Sbjct: 484 LKQA 487
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 225 bits (574), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 201/745 (26%), Positives = 328/745 (44%), Gaps = 96/745 (12%)
Query: 293 VSVCFESNLIEVPNNTWWLDSSATTHVS---HIIQGFLLIQPINEIEKFLFMGNRMKARI 349
+ V F S+ P W +DS A H+ F I+P+N + + N +
Sbjct: 372 IPVSFPSSSTNKPP-FWLIDSGANEHICCDITFFSSFYRIKPVN-----VSLPNGTIVLV 425
Query: 350 KGIGTYRLILDTSCYLDLEKCLYVPECDRNLVSIGRL---DNVGFSFKICNDIFSIYKLK 406
GT + ++ YL+ LY P NL+S+ +L F F + + +
Sbjct: 426 HYAGT--VSFNSKFYLN--HVLYSPNFLLNLISVAKLCESLTCFFHFSLDKCLIQDQQSL 481
Query: 407 YYYGSCTLIDGLYRFNLDAEFIE-SLFNVEHNTGNKC--SAHNECSAF-----LWHQRLG 458
G +DGLY+F + LF+ N S+ N+ F LWH RLG
Sbjct: 482 KMIGLAKQMDGLYKFYPSSSSCNLELFSSPTKYCNVVLPSSCNKIPTFVPSDTLWHFRLG 541
Query: 459 HIFKESILRLVKCEIL-PQLDFTDWDVCIDCIKGKQTKHTLKNPATRNSELLELIHTDIC 517
H+ K+ RL +L P + + +C C K KH P T N
Sbjct: 542 HLSKQ---RLQTLSLLYPSIKIDNKAICDLCHFAKH-KHL---PFTSN------------ 582
Query: 518 GPFDVPSWGGEKYFITFIDDFSRYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRS 577
D SR+ ++ LL K + ++ FI ++ + K +R+
Sbjct: 583 -------------------DHSRFLWIILLKTKAEVSTHVKNFITMIKNHFHTTPKFIRT 623
Query: 578 DRGGEYYGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSML 637
D G E+ + + S GI + TPQQNG ER+++ ++ + R++L
Sbjct: 624 DNGPEFM------------LSTLYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALL 671
Query: 638 NNCTVPLSLWMHGLKTAAYLLNRVPSKAVP-KTPYELWTGRKPSLRHLHVWGCPAEVRIY 696
+P + W + ++ A +L+NRVP+ + ++PY + + P V+GC
Sbjct: 672 YQSKLPPAYWCYAIQHAVFLINRVPTPTLNNQSPYFVLHHKLPDSSLFKVFGCLCYASTL 731
Query: 697 NPHEKKIDARMVSGFFIGYPEKPKGYKFYYPNHSTRIVESGNARFIENG-QISGSSKLRK 755
H K+ R FIGY KG+ Y HS I S + F EN +S
Sbjct: 732 QSHTTKLKHRARKSIFIGYQSGYKGFTLY-DLHSREIFISRHVTFHENFLPYPHTSSSTS 790
Query: 756 VNVQEIQIENPTQMDFPNVSSLDVVPLIVSWFNNMVKQQNN------LNPQNDHIN-DEP 808
+ Q +PT + PN+ S ++ I++ + + P++ N P
Sbjct: 791 PDWQYFSYFHPTPVA-PNLPSPPIIDDIIAPDHPSPDPTPPTSPILPIVPRHSTRNVTAP 849
Query: 809 ANNEQFTNDQVVXXXXXXXXXXXXXXXXXXXDYVVYSLEHECELSIDKDPISFQKAMECD 868
+ + + + + + V SL + E P S+ +A + D
Sbjct: 850 SYLQDYICNNIHAFTYPITHSLSHHHLSNSRSFFVMSLHTQPE------PKSYAEASKLD 903
Query: 869 NSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSKGKIEKYKARVVAK 928
W +AM+ E+Q++ W LV+LP K +GC+W++K K + G +E+YKAR+VAK
Sbjct: 904 C---WKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADGTVERYKARLVAK 960
Query: 929 DYTQKDGIDYKETFSPVSKKDSLIIILALVAHYDLELHQMDVKTTFLNGDLEEEVYMDQP 988
Y Q +G+DY +T+SPV+K ++ +++AL + + LHQ+DV FL+GDL+E+VYM P
Sbjct: 961 GYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLHGDLQEDVYMMVP 1020
Query: 989 EGFVVTGKENLVCKFKKSIYGLKQA 1013
G + + K N VCK KS+YGLKQA
Sbjct: 1021 PG-IKSSKLNQVCKLTKSLYGLKQA 1044
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/464 (28%), Positives = 220/464 (47%), Gaps = 55/464 (11%)
Query: 573 KVVRSDRGGEYYGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEM 632
K +R D G E+ K F+ S GI + TPQQNG ER+++ ++ +
Sbjct: 459 KTIRIDNGPEFMLK------------DFYASHGIIHHKSCVETPQQNGRVERKHQHILNV 506
Query: 633 VRSMLNNCTVPLSLWMHGLKTAAYLLNRVPSKAV-PKTPYELWTGRKPSLRHLHVWGCPA 691
VR++L +P + W + + A +L+NRV + + ++PY + + PSL V+GC
Sbjct: 507 VRALLFQSKLPPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLFKVFGCLC 566
Query: 692 EVRIYNPHEKKIDARMVSGFFIGYPEKPKGYKFY-------------------YPNHSTR 732
H K+ +R F+GY KGY + P H
Sbjct: 567 YASTLQNHRTKLQSRARKSIFLGYQSGYKGYVLFDLTSREIFISRHVSFHETILPYHKNP 626
Query: 733 IVESGNARFIENGQISGSSKLRKVNVQEIQIENPTQMDFPNVSSLDVVPL--IVSWFNNM 790
+ + + + Q + VN Q+ P +D D++P ++
Sbjct: 627 SSTTADWNYYPSSQSYSHDQSPNVNH---QVHIPAVID-------DILPSTHVLPPSPPY 676
Query: 791 VKQQNNLNP-QNDHINDEPANNEQFTNDQVVXXXXXXXXXXXXXXXXXXXDYVVYSLEHE 849
+++P +++ + P + + + + V + SL+
Sbjct: 677 DSPPIHVSPRRSNRVRTAPLHLQDYVCNSVHSTTYPLSHYINYNNISTNHASFISSLQTT 736
Query: 850 CELSIDKDPISFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFK 909
E P ++ +A + D K A E+ ++ WD+V+LP K +GC+W++K
Sbjct: 737 PE------PTTYVEASKHDCWNKAMQA---ELLALEKTGTWDIVDLPAYVKPIGCRWIYK 787
Query: 910 TKXDSKGKIEKYKARVVAKDYTQKDGIDYKETFSPVSKKDSLIIILALVAHYDLELHQMD 969
K ++ G IE+YKAR+VAK YTQ +G+DY ET+SPV+K ++ +++AL + ++ LHQ+D
Sbjct: 788 VKHNADGSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLD 847
Query: 970 VKTTFLNGDLEEEVYMDQPEGFVVTGKENLVCKFKKSIYGLKQA 1013
V FL+G+L+E+VYM P G + K + VCK KKS+YGLKQA
Sbjct: 848 VNNAFLHGELQEDVYMILPPGINI-AKPHQVCKLKKSLYGLKQA 890
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 182 bits (463), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 211/448 (47%), Gaps = 37/448 (8%)
Query: 308 TWWLDSSATTHVSHIIQGFLLIQPINEIEKFLFMGNRMKARIKGIGTYRLILDTSCYLDL 367
TW +DS A+ H+ I+ F PI + L GN A+ G ++ S L
Sbjct: 391 TWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPNGNMAIAKFSGT------VNFSPGLIA 444
Query: 368 EKCLYVPECDRNLVSIGRL--DN---VGFSFKICNDIFSIYKLKYYYGSCTLIDGLYRFN 422
LYV E NL+S+ +L DN V F C I LK G LI+GLY N
Sbjct: 445 RNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKC-FIQDKSNLKMT-GLGELIEGLYFLN 502
Query: 423 LDAEFIESLFNVEHNTGNKCSAHNECSAFL-----WHQRLGHIFKESILRLVKCEILPQL 477
L ++ + S FN H S + + FL WH RLGH+ + +LR+ + P +
Sbjct: 503 LGSQ-VFSQFN--HQPVIALSQSSSSTTFLPQEALWHFRLGHLSNDRLLRMQ--QHFPCI 557
Query: 478 DFTDWDVCIDCIKGKQTKHTLKNPATRNSELLELIHTDICGPFDVPSWGGEKYFITFIDD 537
VC C + K K + S ELIH DI GP S G KYFIT +DD
Sbjct: 558 KVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDD 617
Query: 538 FSRYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPF 597
+SR+ ++ L K++ ++ FI +E Q N KVK VR+D G E+
Sbjct: 618 YSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL------------M 665
Query: 598 AKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYL 657
F+ S+GI + TPQQNG ER+++ ++ + R++L +P W + + A Y+
Sbjct: 666 PDFYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKIFWSYSVLHAIYI 725
Query: 658 LNRVPSKAVP-KTPYELWTGRKPSLRHLHVWGCPAEVRIYNPHEKKIDARMVSGFFIGYP 716
+NR+P+ + K+PY L G P L + V+GC + + H K D+R F+GY
Sbjct: 726 INRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYK 785
Query: 717 EKPKGYKFYYPNHSTRIVESGNARFIEN 744
+ KG Y NH T I S N + E+
Sbjct: 786 QGIKGAILYDLNHKT-IFASRNVTYHEH 812
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 211/448 (47%), Gaps = 37/448 (8%)
Query: 308 TWWLDSSATTHVSHIIQGFLLIQPINEIEKFLFMGNRMKARIKGIGTYRLILDTSCYLDL 367
TW +DS A+ H+ I+ F PI + L GN A+ G T+ S L
Sbjct: 321 TWIVDSGASDHICSSIKNFDSYAPIIPVHIKLPNGNMAIAKFSGTVTF------SPGLIA 374
Query: 368 EKCLYVPECDRNLVSIGRL--DN---VGFSFKICNDIFSIYKLKYYYGSCTLIDGLYRFN 422
LYV E NL+S+ +L DN V F C I LK G LI+GLY N
Sbjct: 375 RNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKC-FIQDKSNLKMT-GLGELIEGLYFLN 432
Query: 423 LDAEFIESLFNVEHNTGNKCSAHNECSAFL-----WHQRLGHIFKESILRLVKCEILPQL 477
L ++ + S FN H S + + FL WH RLGH+ + +LR+ + P +
Sbjct: 433 LGSQ-VFSQFN--HQPVIASSQASSSTTFLPQEALWHFRLGHLSNDRLLRMQ--QHFPCI 487
Query: 478 DFTDWDVCIDCIKGKQTKHTLKNPATRNSELLELIHTDICGPFDVPSWGGEKYFITFIDD 537
VC C + K K + S ELIH DI GP S G KYFIT +DD
Sbjct: 488 KVDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDD 547
Query: 538 FSRYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPF 597
+SR+ ++ L K++ ++ FI +E Q N KVK VR+D G E+
Sbjct: 548 YSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL------------M 595
Query: 598 AKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYL 657
F+ S+GI + TPQQNG ER+++ ++ + R++L +P W + + A Y+
Sbjct: 596 PDFYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKVFWSYSVLHAIYI 655
Query: 658 LNRVPSKAVP-KTPYELWTGRKPSLRHLHVWGCPAEVRIYNPHEKKIDARMVSGFFIGYP 716
+NR+P+ + K+PY L G P L + V+GC + + H K D+R F+GY
Sbjct: 656 INRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYK 715
Query: 717 EKPKGYKFYYPNHSTRIVESGNARFIEN 744
+ KG Y NH T I S N + E+
Sbjct: 716 QGIKGAILYDLNHKT-IFASRNVTYHEH 742
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 194/424 (45%), Gaps = 50/424 (11%)
Query: 302 IEVPNNTWWLDSSATTHVSHIIQGFLLIQPINEIEKFLFMGNRMKARIKGIGTYRLILDT 361
I ++ W+LDS A H+ + F IN + + + N ++ GT R
Sbjct: 372 INSKSDVWFLDSGANEHIVNNTHWFTSFHKINP--RPVNLPNGSSVLVEYAGTIRF---- 425
Query: 362 SCYLDLEKCLYVPECDRNLVSIGRLDNVGFSFKICNDI--FSIYKLKYYYGSCTLIDGLY 419
+ LE LY P NL+SI FK+C+ + ++I+ K C L D
Sbjct: 426 TPQFYLENVLYSPSFTLNLISI---------FKVCSSLNCYAIFHNK----QCLLQD--- 469
Query: 420 RFNLDAEFIESLFNVEHNTGNKCSAHNECSAFLWHQRLGHIFKESILRLVKCEILPQLDF 479
L ++ + L G + + SA LWH RLGH+ + ++ + ++ P L
Sbjct: 470 ---LHSQKMIGL-------GEQFGVYYSYSA-LWHFRLGHVSPKRLIHM--SQLYPTLTV 516
Query: 480 TDWDVCIDCIKGKQTKHTLKNPATRNSELLELIHTDICGPFDVPSWGGEKYFITFIDDFS 539
C C KQ K N + S EL+H DI GP + S +YF+T +DD+S
Sbjct: 517 DVHATCDICHFAKQKKLPFSNSISVASIKFELLHFDIWGPLSITSIHNHRYFLTILDDYS 576
Query: 540 RYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPFAK 599
RY ++ LL K++ ++ FIN ++ Q N K VRSD G E+
Sbjct: 577 RYVWIVLLKSKSEVSQHVKNFINLIQTQYNITPKTVRSDNGPEFL------------LHS 624
Query: 600 FFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYLLN 659
F+ S+GI + TPQQNG ER+++ ++ + R++L +P+S W + L A +++N
Sbjct: 625 FYASKGIVHHRSCVETPQQNGRVERKHQHILNVGRALLYQSKLPVSYWSYALLHATFIIN 684
Query: 660 RVPSKAVP-KTPYELWTGRKPSLRHLHVWGCPAEVRIYNPHEKKIDARMVSGFFIGYPEK 718
RV S + K+PY+L P+ V+G + H K+ AR F+GY
Sbjct: 685 RVTSPTLHNKSPYQLLHDTIPAEHIFKVFGSLCYSTTLHSHRTKLSARARKSVFLGYTVG 744
Query: 719 PKGY 722
KGY
Sbjct: 745 FKGY 748
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 152 bits (385), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 866 ECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSKGKIEKYKARV 925
E + E W AM+ E+Q++ W+ V+LP K +GC+WVFK K + G IE+YKAR+
Sbjct: 872 EANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADGSIERYKARL 931
Query: 926 VAKDYTQKDGIDYKETFSPVSKKDSLIIILALVAHYDLELHQMDVKTTFLNGDLEEEVYM 985
VAK YTQ +G+DY +TFSPV+K ++ +I+AL + LHQ+DV FL+GDL+E VYM
Sbjct: 932 VAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLHGDLQENVYM 991
Query: 986 DQPEGFVVTGKENLVCKFKKSIYGLKQA 1013
P G + N VCK KS+YGLKQA
Sbjct: 992 TLPPG-ISAKHSNTVCKLNKSLYGLKQA 1018
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 175/369 (47%), Gaps = 49/369 (13%)
Query: 388 NVGFS--FKICNDIFSIYKLKYYYGSCTLIDGLYRFNLDAEFIESLFNVEHNTGNKCS-- 443
NV F+ F + ND S+ + G + GLYR+ ++F S ++ H+ C+
Sbjct: 426 NVVFTPQFYLTNDQTSLKMI----GLAKQVAGLYRYTPPSDF--SSTSLMHSPNKSCNFS 479
Query: 444 ----AHNEC--SAFLWHQRLGHIFKESILRLVKCEILPQLDFTDWDVCIDCIKGKQTKHT 497
N C A LWH RLGH+ + ++++ + P + + DVC C KQ
Sbjct: 480 SISCNSNNCIPVAALWHFRLGHLSNQRMIKM--SHLYPSIVHNNRDVCDICHFSKQKHLP 537
Query: 498 LKNPATRNSELLELIHTDICGPFDVPSWGGEKYFITFIDDFSRYDFLYLLHEKNQSVDIL 557
+ + S EL+H DI GP + S G +YF+T +DD SR+ ++ LL K++ +
Sbjct: 538 FSSSLSHASTNFELLHFDIWGPISISSVHGHRYFLTILDDHSRFLWIILLKSKSEVSLHV 597
Query: 558 EIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQ 617
+ FI + Q + K VRSD G E+ F+ S GI + TPQ
Sbjct: 598 KNFILMIRTQFHVTPKYVRSDNGPEFL------------LNDFYSSHGIIHQKSCVETPQ 645
Query: 618 QNGVAERQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYLLNRVPSKAVP-KTPYELWTG 676
QNG ER+++ ++ + R++L +P S W + + A +L+NRVP+ + ++PY +
Sbjct: 646 QNGRVERKHQHILNVGRALLYQSKLPPSFWSYAILHAVFLINRVPTHVLHNQSPYHVLFH 705
Query: 677 RKPSLRHLHVWGCPAEVRIYNPHEKKIDARMVSGFFIGYPEKPKGYKFYYPNHSTR-IVE 735
+ P +++++ + K+ R F+GY KGY + + STR I
Sbjct: 706 KLP------------DIQLF---KSKLQPRARKSLFLGYKSGYKGYHLF--DLSTREIFV 748
Query: 736 SGNARFIEN 744
S + F EN
Sbjct: 749 SRHVIFHEN 757
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 197/414 (47%), Gaps = 32/414 (7%)
Query: 309 WWLDSSATTHVSHIIQGFLLIQPINEIEKFLFMGNRMKARIKGIGTYRLILDTSCYLDLE 368
W +D+ AT H + + F I I L G+ ++A IG +L D L ++
Sbjct: 398 WIVDTGATHHTCYDLNWFTSYSKIETINVNLPNGSVIEACY--IGQVKLSKD----LSID 451
Query: 369 KCLYVPECDRNLVSIGRL---DNVGFSFKICNDIFSIYKLKYYYGSCTLIDGLYRFNLDA 425
LY+P+ NL+S+ +L N F+ I G GLY D
Sbjct: 452 NVLYLPKFAVNLISVSKLCREQNCKLEFEADICIIQEKNTLRKIGLAKEKHGLYYLETDE 511
Query: 426 EFIESLFNVEHNTGNKCSAHNECSAFLWHQRLGHIFKESILRLVKC-EILPQLDFTDWDV 484
S+ N+ + + LWH RLGH+ + ++ + K +P T DV
Sbjct: 512 RNKVSVSNISAQV--ELHQKHVPDGVLWHLRLGHLSHDRMICMNKMYSYVPVSPHTACDV 569
Query: 485 CIDCIKGKQTKHTLKNP-ATRNSEL-LELIHTDICGPFDVPSWGGEKYFITFIDDFSRYD 542
C C + L P ++RN++ +L+H DI GPF S G KYF+T +DD +R+
Sbjct: 570 CQMC-----RQKILPFPISSRNAKTAFDLVHFDIWGPFSTTSVHGHKYFLTILDDCTRHV 624
Query: 543 FLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPFAKFFE 602
++ +L K+++ ++ F++ VERQ RK+K++RSD G E+ +F++
Sbjct: 625 WIVMLKNKSEASYQVKNFVSMVERQFERKIKMIRSDNGPEFM------------LREFYD 672
Query: 603 SRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYLLNRVP 662
+GI + TPQQNG ER+++ ++ + R+++ +P + W + + A YL+NR+P
Sbjct: 673 KKGIIHQRSCVYTPQQNGRVERRHQHILNISRALMFQSKLPKNFWSYAVLHAVYLINRIP 732
Query: 663 SKAV-PKTPYELWTGRKPSLRHLHVWGCPAEVRIYNPHEKKIDARMVSGFFIGY 715
+K + K+ YE+ P L L V+GC + + K D + F+G+
Sbjct: 733 TKILNNKSSYEVLYNEVPDLSSLKVFGCLSYASTLPVNRYKFDPKARKCAFLGF 786
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/436 (25%), Positives = 191/436 (43%), Gaps = 52/436 (11%)
Query: 308 TWWLDSSATTHVSHIIQGFLLIQPINEIEKFLFMGNRMKARIKGIGTYRLILDTSCYLDL 367
+W +DS A HV F I + L G + G + + YL L
Sbjct: 350 SWIIDSGANDHVCFSKTHFTSFYKIKPVLVTLPNGTSIYVHYAGNVHF------TPYLHL 403
Query: 368 EKCLYVPECDRNLVSIGRL-DNVGFSFKICNDIFSIYKL--KYYYGSCTLIDGLYRFNLD 424
LY PE NL+S+ ++ D++ S ++ I + + G DGLY+ L
Sbjct: 404 THVLYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYK--LS 461
Query: 425 AEFIESLFNVEHNT----GNKCSAHNECS--------------------AFLWHQRLGHI 460
F+ + HN+ NK AH+ C+ + LWH RLGH+
Sbjct: 462 MHFVNQQLQL-HNSFKPLPNKV-AHSACNISTSSLSKSSTVFYSSRIPESALWHFRLGHL 519
Query: 461 FKESILRLVKCEILPQLDFTDWDVCIDCIKGKQTKHTLKNPATRNSELLELIHTDICGPF 520
+ + + + + P + + C C + K + ++ + +L+H DI GP
Sbjct: 520 SNQRLSTMSR--LYPSIIVDNKAACDICHFARHKKLPFPHSSSHANSKFQLLHFDIWGPL 577
Query: 521 DVPSWGGEKYFITFIDDFSRYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRG 580
+ G KYF+T +DD +R+ ++ LL K + ++ FI +E Q + K++R+D G
Sbjct: 578 AINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITPKIIRTDNG 637
Query: 581 GEYYGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNC 640
E+ F+ S+GI + TPQQNG ER+++ ++ + R++L
Sbjct: 638 SEFL------------LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQS 685
Query: 641 TVPLSLWMHGLKTAAYLLNRVPSKAVP-KTPYELWTGRKPSLRHLHVWGCPAEVRIYNPH 699
+PLS W + A +L+NRVP+ + ++PY+L P + V+GC H
Sbjct: 686 KLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSH 745
Query: 700 EKKIDARMVSGFFIGY 715
K++ R F+GY
Sbjct: 746 RTKLETRARKSVFLGY 761
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 104/402 (25%), Positives = 177/402 (44%), Gaps = 35/402 (8%)
Query: 564 VERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQQNGVAE 623
+E Q + K++R+D G E+ +F+ S+GI + TPQQNG E
Sbjct: 2 IENQFHVTPKIIRTDNGSEFL------------LHEFYASKGILHQRSCVETPQQNGRVE 49
Query: 624 RQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYLLNRVPSKAVPK-TPYELWTGRKPSLR 682
R+++ ++ + R++L +PLS W + A +L+NR+P+ + +PY L P +
Sbjct: 50 RKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDIT 109
Query: 683 HLHVWGCPAEVRIYNPHEKKIDARMVSGFFIGYPEKPKGYKFYYPNHSTRIVESGNARFI 742
V+GC H K++ R F+GY KGY Y H+ I S + F
Sbjct: 110 TFKVFGCLCYASSLQSHRTKLETRARKSVFLGYKLGFKGYVL-YDLHTREIFISRHVVFH 168
Query: 743 E----NGQISGSSKLRKVNVQEIQIENPTQMDFPNVSSLDVVPLIVSWFNNMVKQQNNLN 798
E IS S L I + + P+VS + P + +
Sbjct: 169 ECVLPYKSISSSQSLDWEYFTSIS----SLLIIPSVSDISHSPSTTKYVPHTQPTTTTTP 224
Query: 799 PQNDHINDEP---ANNEQFTNDQVVXXXXXXXXXXXXXXXXXXXDYVVY---SLEHE--- 849
ND P ++ + + + +YV Y S H
Sbjct: 225 -TNDPSRPPPIRCSSRNKISPSYLKDYICPHKSSTSVNNLYSISNYVSYHNISNPHSHFI 283
Query: 850 CELSIDKDPISFQKAMECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFK 909
L +P ++ E + E W AM+ E+ ++ + W +++ P +K +GC+W++K
Sbjct: 284 LSLHAHNEPKTY---TEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYK 340
Query: 910 TKXDSKGKIEKYKARVVAKDYTQKDGIDYKETFSPVSKKDSL 951
K ++ IE+YKAR+VAK Y Q +G+DY +T+SPV+K ++
Sbjct: 341 IKHNADDTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTI 382
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Query: 877 MKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSKGKIEKYKARVVAKDYTQKDGI 936
M+ E+ ++ W +V+LP K +GC+W+FK K + G IE+YKAR+VAK Y Q +G+
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 937 DYKETFSPVSKKDSLIIILALVAHYDLELHQMDVKTTFLNGDLEEEVYMDQPEGFVVTGK 996
DY +T+SPV+K ++ I+AL + LHQ DV FL+G+L+E+VYM P G V
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG-VPHSH 119
Query: 997 ENLVCKFKKSIYGLKQA 1013
++ VCK KS+YGL+QA
Sbjct: 120 QDEVCKLNKSLYGLQQA 136
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 182/430 (42%), Gaps = 61/430 (14%)
Query: 302 IEVPNNTWWLDSSATTHVS---HIIQGFLLIQPINEIEKFLFMGNRMKARIKGIGTYRLI 358
+ VP++ W +DS A H+ H+ + I+PI + + N ++ GT
Sbjct: 382 LHVPSDHWLIDSGANEHICSSLHLFHSYYRIKPI-----CVNLPNGSSVIVQYAGTVVF- 435
Query: 359 LDTSCYLDLEKCLYVPECDRNLVSIGRL-DNVGFSFKICNDIFSIYKLKY--YYGSCTLI 415
S + + LY P L+S+ ++ ++ + + + I +K G L
Sbjct: 436 ---SPHFHITHVLYSPSFKVYLISVSKICQSLPYHVHFLLNTYVIQDVKTQKMIGLGNLC 492
Query: 416 DGLYRFNL------DAEFIESLFNVEHNTGNKCSAHNECSAF-----LWHQRLGHIFKES 464
DGLYR + A FI S + + + N + +WH RLGH+ +
Sbjct: 493 DGLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSSIPSNAIWHFRLGHLSNQR 552
Query: 465 ILRLVKCEILPQLDFTDWDVCIDCIKGKQTKHTLKNPA-TRNSELLELIHTDICGPFDVP 523
+ + + T+ N A + S EL+H DI GP V
Sbjct: 553 L---------------------SMMHSLYSSITIDNKAYSIASSKFELLHFDIWGPLSVT 591
Query: 524 SWGGEKYFITFIDDFSRYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGEY 583
S G KYF+T +DDFSR+ ++ LL K++ + ++ F+ + K +RSD G E+
Sbjct: 592 SVHGHKYFLTIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHTHYQITPKYIRSDNGPEF 651
Query: 584 YGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNCTVP 643
+F+ S+GI + TPQQNG ER+++ ++ + R++L +P
Sbjct: 652 L------------IPEFYASKGIIHQKSCVETPQQNGRVERKHQHILNVARALLFQSKLP 699
Query: 644 LSLWMHGLKTAAYLLNRVPSKAVP-KTPYELWTGRKPSLRHLHVWGCPAEVRIYNPHEKK 702
W + + A +L+N+VP+ K+PY+L P + V+GC K
Sbjct: 700 NFFWSYAVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFASTLLAQRSK 759
Query: 703 IDARMVSGFF 712
+ +R F
Sbjct: 760 LQSRARKSIF 769
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 120 bits (300), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 121/255 (47%), Gaps = 13/255 (5%)
Query: 472 EILPQLDFTDWDVCIDCIKGKQTKHTLKNPATRNSELLELIHTDICGPFDVPSWGGEKYF 531
+ P + + C C + K + ++ S +L+H DI GP + S G KYF
Sbjct: 3 HLYPSIIVDNKAACDVCHFARHKKLPFSHSSSHASSKFQLLHFDIWGPLAINSIHGHKYF 62
Query: 532 ITFIDDFSRYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENG 591
+T +DD +R+ ++ LL K + ++ FI +E Q + K++R+D G E+
Sbjct: 63 LTIVDDHTRFLWIILLKTKAEVPMHIKNFIVMIENQFHVTPKIIRTDNGSEFL------- 115
Query: 592 QCPSPFAKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNCTVPLSLWMHGL 651
+F+ S+GI + TPQQNG ER+++ ++ + R++L +PLS W +
Sbjct: 116 -----LHEFYASKGILHQSSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAF 170
Query: 652 KTAAYLLNRVPSKAVPK-TPYELWTGRKPSLRHLHVWGCPAEVRIYNPHEKKIDARMVSG 710
A +L+NR+ + + +PY L P + V+GC H K++ R
Sbjct: 171 LHAVFLINRITTPVLHNFSPYHLLYDSPPDITTFKVFGCLCYASSLQSHITKLETRARKS 230
Query: 711 FFIGYPEKPKGYKFY 725
F+GY KGY Y
Sbjct: 231 VFLGYKLGFKGYVLY 245
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 866 ECDNSEKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSKGKIEKYKARV 925
E + E W AM+ E+ ++ + W +++ P +K +GC+W++K K + G IE+YKAR+
Sbjct: 390 EANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIKHHADGTIERYKARL 449
Query: 926 VAKDYTQ 932
VAK Y Q
Sbjct: 450 VAKGYNQ 456
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 48/317 (15%)
Query: 632 MVRSMLNNCTVPLSLWMHGLKTAAYLLNRVPSKAVP-KTPYELWTGRKPSLRHLHVWGCP 690
MVRSML +P W + TA Y+LNR P+K + K P E+W+ RKPS+ +L V+G
Sbjct: 1 MVRSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSI 60
Query: 691 AEVRIYNPHEKKIDARMVSGFFIGYPEKPKGYKFYYPNHSTRIVESGNARFIENGQISGS 750
+ + KK++ + + +GY Y+ HS +I + + + +E +
Sbjct: 61 FYKHVPDSRRKKLEDKTEAMILVGY-HNTGAYRLL-DLHSKKISITRDVKVLEEEYWDWN 118
Query: 751 SKLRKVNVQEIQIENPTQMDFPNVSSLDVVPLIVSWFNNMVKQQNNLNPQNDHINDEPAN 810
S V + + IEN + D +++ +V+ VS+ + PQ +
Sbjct: 119 SNECSVYEKNVIIENKKESD-ELLTNEEVISEEVSYEEPTTIAR----PQRNKQMLRRLQ 173
Query: 811 NEQFTNDQVVXXXXXXXXXXXXXXXXXXXDYVVYSLEHECELSIDKDPISFQKAMECDNS 870
+ Q T D E+ D + + F AM D
Sbjct: 174 DCQVTGDD--------------------------------EIGSDGELVHF--AMLVDTK 199
Query: 871 EKWFNAMKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSKGKIEKYKARVVAKDY 930
+ +++S NQ W+L++L +G K + KWVFK K + +GKI K+KAR+VA+ +
Sbjct: 200 PLY------KLKSSGKNQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVARVF 253
Query: 931 TQKDGIDYKETFSPVSK 947
+K+G DY E ++K
Sbjct: 254 LKKEGFDYTEVVFKLNK 270
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 28/240 (11%)
Query: 484 VCIDCIKGKQTKHTLKNPATRNSELLELIHTDICGPFDVPSWGGEKYFITFIDDFSRYDF 543
VC C KQ + + EL+H DI GP + S G KYF+T +DD SR+ +
Sbjct: 497 VCDICHFAKQKHLPFSISTSHATSNFELLHLDIWGPLSISSIHGHKYFLTIVDDHSRFLW 556
Query: 544 LYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPFAKFFES 603
+ L K+ ++ FI V+ Q + K +RSD G E+ F+ES
Sbjct: 557 IISLKTKSGVSHHVKSFIKMVQTQFHVTPKCIRSDNGPEFL------------ILSFYES 604
Query: 604 RGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYLLNRVPS 663
GI + TPQQNG ER++ ++ + R++L +P S W + L A +L+NR P+
Sbjct: 605 LGILHQKSCVETPQQNGRVERKHHHILNVGRALLYQSKLPASYWSYALLHAVFLINRKPT 664
Query: 664 KAVP-KTPYELWTGRKPSLRHLHVWGCPAEVRIYNPHEKKIDARMVSGFFIGYPEKPKGY 722
+ ++PY + P + + + R F+GY KG+
Sbjct: 665 PLLEGQSPYYALHHKFPDIDTF---------------KNQASTRARKTVFLGYKSGYKGF 709
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 29/150 (19%)
Query: 877 MKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSKGKIEKYKARVVAKDYTQKDGI 936
M+ E+ ++ + W LV+LP K +GC+W++K K + G I++YKAR+V K Y Q +G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 937 DYKETFSPVSKKDS--LII--------------------------ILALVAHYDLELHQM 968
DY +T+SPV+K + L++ ++AL + +H++
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 969 DVKTTFLNGDLEEEVYMDQPEGFVVTGKEN 998
D + FL+GDL+E+VYM P+G + T K N
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQG-ITTSKPN 149
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 138/343 (40%), Gaps = 62/343 (18%)
Query: 414 LIDGLYRFNLDAE--FIESLFN------VEHNTGNKCSAHNEC---SAFLWHQRLGHIFK 462
L DGL R + A F N V + + N S +N S LWH RLGH+
Sbjct: 395 LCDGLCRLRIPASSNFSHCFVNNFQCNKVSYESCNSVSCNNNVHIPSTALWHFRLGHLSN 454
Query: 463 ESILRLVKCEILPQLDFTDWDVCIDCIKGKQTKHTLKNPATRNSELLELIHTDICGPFDV 522
+ + ++ + P + + +C C KQ K + + S EL++ DI GP
Sbjct: 455 QRLSQMH--HLYPDIHVDNKFICDICHFAKQRKLPYNSSTSIASSNFELLYLDIWGPLAK 512
Query: 523 PSWGGEKYFITFIDDFSRYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGE 582
S G++YF+T +DD SR+ + L K++ ++ FI ++ + K++RSD G
Sbjct: 513 VSIHGQRYFLTIVDDHSRFLWTILFKNKSEVPSHIQHFIYLIQNKHKVTPKIIRSDNGHV 572
Query: 583 YYGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNCTV 642
+ + F+ S+GI + TPQ N
Sbjct: 573 FL------------LSAFYASQGIIHQRSCVETPQHN----------------------- 597
Query: 643 PLSLWMHGLKTAAYLLNRVPSKAVP-KTPYELWTGRKPSLRHLHVWGCPAEVRIYNPHEK 701
+L+NRVP+ + K+PY++ P + V+GC H
Sbjct: 598 ------------VFLINRVPTLVLENKSPYQVLYKTLPDINSFKVFGCLCYASTLQSHRT 645
Query: 702 KIDARMVSGFFIGYPEKPKGYKFYYPNHSTRIVESGNARFIEN 744
K+ +R F+GY KG F Y ++ I S N F E+
Sbjct: 646 KLQSRARKSVFLGYKSGYKG-SFLYDLNTKEIFMSRNVTFHES 687
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 516 ICGPFDVPSWGGEKYFITFIDDFSRYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVV 575
I GP V S G +YF+T +DD +R+ ++ LL K + ++ FI ++ + K +
Sbjct: 521 IWGPLSVASVHGHRYFLTILDDHTRFLWVILLKTKAEVSSHVKNFITMIQNHFHTTPKFI 580
Query: 576 RSDRGGEYYGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRS 635
R+D G E+ F+ S GI + TPQQNG ER+++ ++ + R+
Sbjct: 581 RTDNGPEFM------------LPSFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRA 628
Query: 636 MLNNCTVPLSLWMHGLKTAAYLLNRVPSKAV-PKTPYELWTGRKPSL 681
+L +P S W + + A +L+NRVP+ + ++PY L + P +
Sbjct: 629 LLYQSKLPPSFWSYAIHHAVFLINRVPTPLLHNQSPYFLLHHKLPDI 675
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 10/133 (7%)
Query: 485 CIDCIKGKQTKHTLKNP-ATRNSELLELIHTDICGPFDVPSWGGEKYFITFIDDFSRYDF 543
C C+ GK ++ K+ R +L ++H+DI GP VP++ G +YFITF+D++S+ +
Sbjct: 15 CNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRYFITFVDEYSKMLW 74
Query: 544 LYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPFAKFFES 603
LYL+ K+ ++++ + F E+Q K+K++ + GGEY K F + +
Sbjct: 75 LYLIKLKSDALEVFKKFKVLPEKQSGMKLKILITYGGGEYTSK---------DFESYCTN 125
Query: 604 RGICAXYTMPGTP 616
+GI T P TP
Sbjct: 126 QGIIHEVTTPYTP 138
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 615 TPQQNGVAERQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYLLNRVPSKAVP-KTPYEL 673
TPQ NGVAER N+TL+E R ML+N + + W + T YL+NR P ++ KT YEL
Sbjct: 5 TPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTLYEL 64
Query: 674 WTGRKPSLRHLHVWGCPAEVRIYNPHEKKIDAR 706
W G+ +L V+GC Y+ +E K++ R
Sbjct: 65 WPGKSVDYSNLRVFGCTV---YYHVNEWKLERR 94
>IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H fold
CU571152.5 61656-61988 H EGN_Mt090430 20090702
Length = 110
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 9/118 (7%)
Query: 526 GGEKYFITFIDDFSRYDFLYLLHEKNQSVDILEIFINEVERQLNRKVKVVRSDRGGEYYG 585
GG +YF+ FIDD+S + ++Y++ +++ I F ++ Q ++ +KV R D EY
Sbjct: 2 GGARYFVLFIDDYSHFTWIYMIKNRHELTQIYINFAKMIQTQFSKVIKVFRRDNAMEYR- 60
Query: 586 KFNENGQCPSPFAKFFESRGICAXYTMPGTPQQNGVAERQNRTLMEMVRSMLNNCTVP 643
S F +G + ++ P T QQ G AER++R +++ V +ML + + P
Sbjct: 61 --------DSKLLSFLSEQGTFSEFSYPYTSQQKGRAERKHRHILDSVCAMLISASCP 110
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 63.5 bits (153), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 55/93 (59%)
Query: 877 MKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSKGKIEKYKARVVAKDYTQKDGI 936
M ++++++ W L L + +GCKW ++ K G IE++K ++ KDYT+++G+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 937 DYKETFSPVSKKDSLIIILALVAHYDLELHQMD 969
+ +TFS V+K + ++L++V L Q+D
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 48/180 (26%)
Query: 564 VERQLNRKVKVVRSDRGGEYYGKFNENGQCPSPFAKFFESRGICAXYTMPGTPQQNGVAE 623
+E Q +KVK ++ D G E+ C S F +F ++ GI + + TPQQN VA+
Sbjct: 18 LENQFGKKVKRLQIDNGLEF---------CWSEFNEFCKTEGISRHHMVRNTPQQNSVAK 68
Query: 624 RQNRTLMEMVRSMLNNCTVPLSLWMHGLKTAAYLLNRVPSKAVPKTPYELWTGRKPSLRH 683
R N+TL+E R ML+N + + W TG
Sbjct: 69 RMNQTLLERARCMLSNAGLTRTFWGE-------------------------TG------- 96
Query: 684 LHVWGCPAEVRIYNPHEKKIDARMVSGFFIGYPEKPKGYKFYYPNHSTRIVESGNARFIE 743
+GC R+ +E K+++R F+GY + K Y+ + P+ + R++ S N F E
Sbjct: 97 ---FGCTVYYRV---NEGKLESRAKKRVFVGYGDGVKEYRIWSPSEN-RVILSRNVVFDE 149
>IMGA|Medtr4g104320.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711151-22711574 H
EGN_Mt090430 20090702
Length = 99
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 41/137 (29%)
Query: 877 MKEEMQSMSDNQVWDLVELPEGSKQVGCKWVFKTKXDSKGKIEKYKARVVAKDYTQKDGI 936
M EE+ S+ N+ +LV L K +G KWV+K K + +GKI K
Sbjct: 1 MLEELSSIKKNKTLELVGLSTDEKAIGVKWVYKLKTNHEGKIVK---------------- 44
Query: 937 DYKETFSPVSKKDSLIIILALVAHYDLELHQMDVKTTFLNGDLEEEVYMDQPEGFVVTGK 996
+ L D+K FLNG LEE +++ QP G + K
Sbjct: 45 -------------------------KVPLFHFDMKLYFLNGSLEETMFVKQPSGLEIKCK 79
Query: 997 ENLVCKFKKSIYGLKQA 1013
E V K K +YGLKQA
Sbjct: 80 EENVYKLHKDLYGLKQA 96
>IMGA|Medtr3g044280.1 hypothetical retrotransposon, related
chr03_pseudomolecule_IMGAG_V3 12337068-12337358 H
EGN_Mt090430 20090702
Length = 96
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 452 LWHQRLGHIFKESILRLVKCEILPQLDFTDWDVCIDCIKGKQTKHTLKNPATRNSELLEL 511
LWH+RL H+ ++ +++L K +L + C CI K++K + + + + +L+L
Sbjct: 10 LWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPKRPTILDL 69
Query: 512 IHTDICGPFDVPSWGGEKYFITFIDD 537
+H + GP + GG YF++FIDD
Sbjct: 70 VHCHLFGPMKTGTIGGSTYFLSFIDD 95
>IMGA|Medtr5g082230.1 hypothetical retrotransposon, related
chr05_pseudomolecule_IMGAG_V3 30910887-30910597 H
EGN_Mt090430 20090702
Length = 96
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 452 LWHQRLGHIFKESILRLVKCEILPQLDFTDWDVCIDCIKGKQTKHTLKNPATRNSELLEL 511
LWH+RL H+ ++ +++L K +L + C CI K++K + + + + +L+L
Sbjct: 10 LWHKRLCHMIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPKRPTILDL 69
Query: 512 IHTDICGPFDVPSWGGEKYFITFIDD 537
+H + GP + GG YF++FIDD
Sbjct: 70 VHCHLFGPMKTGTIGGSTYFLSFIDD 95
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 899 SKQVGCKWVFKTKXDSKGKIEKYKARVVAKDYTQKDGIDY 938
+K VGC+WV+K K + G+IEKYKAR+VAK YTQ +G D+
Sbjct: 11 AKIVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDF 50
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 969 DVKTTFLNGDLEEEVYMDQPEGFVVTGKENLVCKFKKSIYGLKQA 1013
D TFL+GDL+E+VYM P+G V + VCK KS+YGLKQA
Sbjct: 204 DANNTFLHGDLQEDVYMHPPQG-VSPPRPGQVCKLLKSLYGLKQA 247
>IMGA|Medtr8g128700.1 Integrase, catalytic region
chr08_pseudomolecule_IMGAG_V3 30179122-30179823 H
EGN_Mt090430 20090702
Length = 193
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%)
Query: 452 LWHQRLGHIFKESILRLVKCEILPQLDFTDWDVCIDCIKGKQTKHTLKNPATRNSELLEL 511
LWH RLGH+ + + L K +L D + GK+ ++ R L+
Sbjct: 103 LWHMRLGHMSERGMQILAKDNLLYGHKIKDPGLSEHYAFGKRHRNKFLKVIHRTKGTLDY 162
Query: 512 IHTDICGPFDVPSWGGEKYFITFIDDFSR 540
IH D P V S GG KYF++ IDD+SR
Sbjct: 163 IHDDCWEPSRVESLGGHKYFLSLIDDYSR 191
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 968 MDVKTTFLNGDLEEEVYMDQPEGFVVTGKENLVCKFKKSIYGLKQA 1013
MDV FL+GDL+E+VYM P GF T LVCK +KS Y LK A
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGF-HTSSSRLVCKLRKSQYVLKHA 45