Jatropha Genome Database

JcCA0003732.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003732.20 + phase: 0 
         (273 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g010780.2 transcription initiation factor-related, pu...   355   1e-98
IMGA|Medtr5g010780.1 transcription initiation factor-related, pu...   347   4e-96
IMGA|Medtr5g010780.4 transcription initiation factor-related, pu...   200   7e-52
IMGA|Medtr5g010780.3 transcription initiation factor-related, pu...   199   9e-52
IMGA|AC225518_31.1 hypothetical protein AC225518.12 120611-12033...    81   5e-16

>IMGA|Medtr5g010780.2 transcription initiation factor-related,
           putative chr05_pseudomolecule_IMGAG_V3 2752859-2748183 E
           EGN_Mt090430 20090702
          Length = 270

 Score =  355 bits (912), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 184/281 (65%), Positives = 209/281 (74%), Gaps = 20/281 (7%)

Query: 1   MALHEKLDRFKKQQEKCQSTLADIAGPSKSTGAQKSIPAASTVTNTRTPGPPVKFSNDTE 60
           MAL  KLDRFKKQQEKCQSTL+ IA  +K+  A  S+P A           PVKFS DTE
Sbjct: 1   MALQGKLDRFKKQQEKCQSTLSSIAA-NKAVSA--SVPNALA---------PVKFSTDTE 48

Query: 61  RLQHINSIRKAPVGAQMKH--------KTAFTPEQINDACFVDVKSNKTVFDSLRNNPKV 112
           RLQHINSIRKAPVGAQMK         + A T EQIN+ C VD+K+NK VFD++R NPKV
Sbjct: 49  RLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPKV 108

Query: 113 NYDGRCFSYKSKHDLKDKNQLLSLICKFPEGIATIDLKDAYPAVTEDLQALKAAGKIWLL 172
            YDG  FSYKSKH L+DK +LL LI KFPEGIA IDLKD+YP V EDLQALK   +IWLL
Sbjct: 109 RYDGERFSYKSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQALKGGREIWLL 168

Query: 173 SNYDSQEDIAYPNDPRANIKVDDELKQLFRGVELAHDMLDIERDLIKNGMKPATDTAKRR 232
           SN+DSQEDIAYPNDP+  IKVDD+LKQLFRG+EL  DM+DIERDL KNGMKPAT+TAKRR
Sbjct: 169 SNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRR 228

Query: 233 AAAQVQGIXXXXXXXXXXXXXXXRTKLTNAHLPELFRNLGS 273
           +AAQ++GI               RTKLTNAHLPELF+NL +
Sbjct: 229 SAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLNN 269


>IMGA|Medtr5g010780.1 transcription initiation factor-related,
           putative chr05_pseudomolecule_IMGAG_V3 2753544-2748183 E
           EGN_Mt090430 20090702
          Length = 313

 Score =  347 bits (890), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 184/292 (63%), Positives = 209/292 (71%), Gaps = 31/292 (10%)

Query: 1   MALHEKLDRFKKQQEKCQSTLADIAGPSKSTGAQKSIPAASTVTNTRTPGPPVKFSNDTE 60
           MAL  KLDRFKKQQEKCQSTL+ IA  +K+  A  S+P A           PVKFS DTE
Sbjct: 33  MALQGKLDRFKKQQEKCQSTLSSIAA-NKAVSA--SVPNALA---------PVKFSTDTE 80

Query: 61  RLQHINSIRKAPVGAQMKH--------KTAFTPEQINDACFVDVKSNKTVFDSLRNNPKV 112
           RLQHINSIRKAPVGAQMK         + A T EQIN+ C VD+K+NK VFD++R NPKV
Sbjct: 81  RLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPKV 140

Query: 113 NYDGRCFSYK-----------SKHDLKDKNQLLSLICKFPEGIATIDLKDAYPAVTEDLQ 161
            YDG  FSYK           SKH L+DK +LL LI KFPEGIA IDLKD+YP V EDLQ
Sbjct: 141 RYDGERFSYKVTFILAYMLTFSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQ 200

Query: 162 ALKAAGKIWLLSNYDSQEDIAYPNDPRANIKVDDELKQLFRGVELAHDMLDIERDLIKNG 221
           ALK   +IWLLSN+DSQEDIAYPNDP+  IKVDD+LKQLFRG+EL  DM+DIERDL KNG
Sbjct: 201 ALKGGREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNG 260

Query: 222 MKPATDTAKRRAAAQVQGIXXXXXXXXXXXXXXXRTKLTNAHLPELFRNLGS 273
           MKPAT+TAKRR+AAQ++GI               RTKLTNAHLPELF+NL +
Sbjct: 261 MKPATNTAKRRSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLNN 312


>IMGA|Medtr5g010780.4 transcription initiation factor-related,
           putative chr05_pseudomolecule_IMGAG_V3 2753544-2750633 E
           EGN_Mt090430 20090702
          Length = 191

 Score =  200 bits (508), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 121/170 (71%), Gaps = 20/170 (11%)

Query: 1   MALHEKLDRFKKQQEKCQSTLADIAGPSKSTGAQKSIPAASTVTNTRTPGPPVKFSNDTE 60
           MAL  KLDRFKKQQEKCQSTL+ IA  +K+  A  S+P A           PVKFS DTE
Sbjct: 33  MALQGKLDRFKKQQEKCQSTLSSIAA-NKAVSA--SVPNALA---------PVKFSTDTE 80

Query: 61  RLQHINSIRKAPVGAQMKH--------KTAFTPEQINDACFVDVKSNKTVFDSLRNNPKV 112
           RLQHINSIRKAPVGAQMK         + A T EQIN+ C VD+K+NK VFD++R NPKV
Sbjct: 81  RLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPKV 140

Query: 113 NYDGRCFSYKSKHDLKDKNQLLSLICKFPEGIATIDLKDAYPAVTEDLQA 162
            YDG  FSYKSKH L+DK +LL LI KFPEGIA IDLKD+YP V EDLQ 
Sbjct: 141 RYDGERFSYKSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQV 190


>IMGA|Medtr5g010780.3 transcription initiation factor-related,
           putative chr05_pseudomolecule_IMGAG_V3 2753544-2748183 E
           EGN_Mt090430 20090702
          Length = 205

 Score =  199 bits (507), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 108/171 (63%), Positives = 122/171 (71%), Gaps = 20/171 (11%)

Query: 1   MALHEKLDRFKKQQEKCQSTLADIAGPSKSTGAQKSIPAASTVTNTRTPGPPVKFSNDTE 60
           MAL  KLDRFKKQQEKCQSTL+ IA  +K+  A  S+P A           PVKFS DTE
Sbjct: 33  MALQGKLDRFKKQQEKCQSTLSSIAA-NKAVSA--SVPNALA---------PVKFSTDTE 80

Query: 61  RLQHINSIRKAPVGAQMKH--------KTAFTPEQINDACFVDVKSNKTVFDSLRNNPKV 112
           RLQHINSIRKAPVGAQMK         + A T EQIN+ C VD+K+NK VFD++R NPKV
Sbjct: 81  RLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPKV 140

Query: 113 NYDGRCFSYKSKHDLKDKNQLLSLICKFPEGIATIDLKDAYPAVTEDLQAL 163
            YDG  FSYKSKH L+DK +LL LI KFPEGIA IDLKD+YP V EDLQ +
Sbjct: 141 RYDGERFSYKSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQFI 191


>IMGA|AC225518_31.1 hypothetical protein AC225518.12 120611-120334
          E EGN_Mt090430 20090702
          Length = 88

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 56/83 (67%), Gaps = 6/83 (7%)

Query: 1  MALHEKLDRFKKQQEKCQSTLADIAGPSKSTGAQK---SIPAASTVTNTRTPGPPVKFSN 57
          M   EKLDRFKKQQEKCQSTL  IA  S   G++K    + AA+  +N R     VKFSN
Sbjct: 1  MFAAEKLDRFKKQQEKCQSTLFRIA--SSKVGSRKPNTPVVAANASSNGRNSKTGVKFSN 58

Query: 58 DTERLQHI-NSIRKAPVGAQMKH 79
          DTERLQ I N+I KAPVGAQMK 
Sbjct: 59 DTERLQQINNNICKAPVGAQMKR 81