Jatropha Genome Database

JcCA0003732.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003732.10 + phase: 1 /pseudo/partial
         (434 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g036540.1 Transcriptional factor B3; Zinc finger, CW-...   133   1e-31
IMGA|Medtr5g083230.1 Transcriptional factor B3 chr05_pseudomolec...   114   1e-25
IMGA|Medtr2g014020.1 Transcriptional factor B3 chr02_pseudomolec...   105   5e-23
IMGA|Medtr7g080350.1 Transcriptional factor B3 chr07_pseudomolec...    89   5e-18

>IMGA|Medtr4g036540.1 Transcriptional factor B3; Zinc finger,
           CW-type chr04_pseudomolecule_IMGAG_V3 8953556-8945623 E
           EGN_Mt090430 20090702
          Length = 900

 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 99/173 (57%), Gaps = 45/173 (26%)

Query: 1   TFSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPNSAAITEASFSGIV------------ 48
           TFSR+DP GKL+MGFRKATN++  +Q+   S +PN +  +E S+SG+             
Sbjct: 398 TFSRMDPEGKLIMGFRKATNSA--SQETFPSNMPNGSHSSETSYSGVYENIPILSGYSGL 455

Query: 49  ------TSENHGGRVNG----------------------DALLQP---TSEKKRTRNIGP 77
                  SE H   ++                       D L  P     EKKRTRNIG 
Sbjct: 456 LQSQKGCSETHLNALSKKWNSVGADMDWHNVEMPESRKRDVLSLPPVLVPEKKRTRNIGS 515

Query: 78  KNKRLLMNSEDALELRLTWEEAQDLLRPPPSVKPSIVAIEDHEFEEYDXATSF 130
           K+KRLL++SEDALEL+LTWEEAQDLLRPPP VKPS+V IEDH FEEY+    F
Sbjct: 516 KSKRLLIDSEDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVF 568



 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 12/126 (9%)

Query: 317 KDDSE-------MSPTDKLDNE-RNPN----RKQTEVAETSAGQIDLNCHPNGEDIQMDI 364
           KD+SE       ++P D  +NE R PN    R + +VA+ + GQ+DLNC P+ ED+Q   
Sbjct: 757 KDESEVDSTSRHLTPVDGSENEARVPNELDSRNEDQVADAAKGQLDLNCQPDREDMQAGP 816

Query: 365 PGLSIMDLADAANMPFDNYIKENGLSSLMCDRQASLGSCSHSQSDGENLRRLSDEAFLAS 424
             LS+M L + AN+P + Y+K+NGLSSL+ ++Q +  S   + +  E+  R +++   AS
Sbjct: 817 NTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAHTTNESEGRQNEDCCTAS 876

Query: 425 IGWDRE 430
              ++E
Sbjct: 877 AVHEQE 882


>IMGA|Medtr5g083230.1 Transcriptional factor B3
           chr05_pseudomolecule_IMGAG_V3 31558410-31553964 E
           EGN_Mt090430 20090702
          Length = 754

 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/168 (43%), Positives = 88/168 (52%), Gaps = 44/168 (26%)

Query: 1   TFSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPNSAAITEASFSGIVTSEN-------- 52
           TFSRIDPG K + GFR++   S+ TQDA TS+  N   I + +FSG   + N        
Sbjct: 373 TFSRIDPGEKFLFGFRRSLT-SIVTQDASTSSHSNGILIKDTNFSGAPQNLNSLSSFSNL 431

Query: 53  -----------------HGGRVNGDA------------------LLQPTSEKKRTRNIGP 77
                            H    NG A                   L   SEKKR+RNIG 
Sbjct: 432 LQSMKGNGEPYLNGHSEHLRLGNGTADWLKTANSEEEMNNGPLQRLVSVSEKKRSRNIGT 491

Query: 78  KNKRLLMNSEDALELRLTWEEAQDLLRPPPSVKPSIVAIEDHEFEEYD 125
           K KRL ++SEDA+ELRLTWEEAQ+ L PPPSV+P+ V IED  FEEYD
Sbjct: 492 KTKRLHIHSEDAMELRLTWEEAQEFLCPPPSVEPNFVTIEDQVFEEYD 539


>IMGA|Medtr2g014020.1 Transcriptional factor B3
           chr02_pseudomolecule_IMGAG_V3 3428987-3437369 E
           EGN_Mt090430 20090702
          Length = 834

 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 101/180 (56%), Gaps = 14/180 (7%)

Query: 1   TFSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPNSAAITEASFSGIVTSEN--HGGRVN 58
           TFSR++P G+LVMGFRKATN     QD + +   N  +  E   +   +  N    G + 
Sbjct: 382 TFSRLEPEGRLVMGFRKATNPLPSDQDNEANKTGNGFSAPEVELADPSSWSNVDKSGYIA 441

Query: 59  GDALLQPT--SEKKRTRNIGPKNKRLLMNSEDALELRLTWEEAQDLLRPPPSVKPSIVAI 116
            +AL   +  S K++   +G K+KRL + +ED +EL++TW+EAQ LLRPPP+  PSIV I
Sbjct: 442 KEALGSKSLISRKRKNNILGSKSKRLKIENEDIIELKITWQEAQGLLRPPPNHVPSIVVI 501

Query: 117 EDHEFEEYDXA-----TSFWEEDSICXSTIWGTGAMGSMXXLLQMAKIAARCSSPSEVDL 171
           E  EFEEY+ A      S +  D++     W           L+  KIA+ C+S S++D+
Sbjct: 502 EGFEFEEYEDAPVLGKPSIFTSDNMGERIQWARCED-----CLKWRKIASMCTSSSKMDI 556


>IMGA|Medtr7g080350.1 Transcriptional factor B3
           chr07_pseudomolecule_IMGAG_V3 16965049-16963033 H
           EGN_Mt090430 20090702
          Length = 253

 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 20/126 (15%)

Query: 1   TFSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPNSAAITEASFSGIVTSENHGGRVNGD 60
           TF+R+DPG KL++GFR+A+ +S+     Q + I  S  +                     
Sbjct: 97  TFNRMDPGEKLIIGFRRASVSSI-----QVNNIAMSKGMKRKRLCL------------PQ 139

Query: 61  ALLQPTSEKKRTRNIGPK-NKRLLMNSEDALELRLTWEEAQDLLRPPPSVKPSIVAIEDH 119
            L+ P  +KKRT +I  K NK LL+++++ L L+LTWEEAQD L PPP+V  +IV IEDH
Sbjct: 140 ELVVP--KKKRTCDIESKRNKSLLIDNQETLMLKLTWEEAQDFLHPPPTVNSNIVVIEDH 197

Query: 120 EFEEYD 125
            FEEY+
Sbjct: 198 VFEEYE 203