Jatropha Genome Database

JcCA0003701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003701.10 - phase: 2 /TE/partial
         (227 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g059250.1 Retrotransposon gag protein chr03_pseudomol...    71   3e-13
IMGA|Medtr8g052750.1 hypothetical protein chr08_pseudomolecule_I...    59   2e-09
IMGA|Medtr7g046290.1 Retrotransposon gag protein chr07_pseudomol...    53   1e-07
IMGA|Medtr5g105410.1 Retrotransposon gag protein chr05_pseudomol...    48   4e-06
IMGA|AC233661_6.1 Retrotransposon gag protein AC233661.2 33103-3...    47   8e-06

>IMGA|Medtr3g059250.1 Retrotransposon gag protein
           chr03_pseudomolecule_IMGAG_V3 13301930-13300773 H
           EGN_Mt090430 20090702
          Length = 385

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 5/176 (2%)

Query: 12  LDDMPSRTASELEAQ--KMREKLELLERSITALKTHKEVVDM-DSLSLFLEA-RLPTKFK 67
           L+D        +EA+  K+RE+LELL  ++T   T + +  M    S  ++   +P  F+
Sbjct: 36  LEDRERELIHHMEARERKLREQLELLRNNVTGADTTRLMPKMFQPFSAEIQVVEIPRNFR 95

Query: 68  MPNMDKFDGTTCPTTHLKMYVGGLNPFGLNSELLAQLFQQSLTGAALRWFVSLDRSKMKN 127
            P +D +DGT+ P  H+  +   +   G +  L  ++F  +L G A +W   L    + N
Sbjct: 96  EPTIDSYDGTSDPHGHVSTFQTQMFISGADDALSCKIFVGTLKGVAHKWIAGLPARSVTN 155

Query: 128 WEDICNAFNTQYHYNIEVDVTRRELETTKQKNNEPFSSFLSRWRAKAAQMIKRPSE 183
           +ED+   F  Q+  NIE      +L   +Q+  E   S+L+R+   A  M+  P+E
Sbjct: 156 FEDMATRFVAQFAANIEKPFLLADLFDIRQRPIESLKSYLARF-NNATLMVMEPNE 210


>IMGA|Medtr8g052750.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 11682193-11681927 H
           EGN_Mt090430 20090702
          Length = 88

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 57  FLEARLPTKF-KMPNMDKFDGTTCPTTHLKMYVGGLNPFGLNSELLAQLFQQSLTGAALR 115
           F E R+PT   K P MD +DGTTCP  ++K     LN   +   +  +LF  +L      
Sbjct: 4   FEEVRIPTGLEKPPQMDPYDGTTCPDKNIKNIKSILNYRNIRGTVKCRLFATTLQKGGKS 63

Query: 116 WFVSLDRSKMKNWEDICNAF 135
           W+  L R  + +WE++C  F
Sbjct: 64  WYKILRRESIDSWEEVCRKF 83


>IMGA|Medtr7g046290.1 Retrotransposon gag protein
           chr07_pseudomolecule_IMGAG_V3 11333685-11336345 E
           EGN_Mt090430 20090702
          Length = 189

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 50/107 (46%)

Query: 71  MDKFDGTTCPTTHLKMYVGGLNPFGLNSELLAQLFQQSLTGAALRWFVSLDRSKMKNWED 130
           MD +DG T P  H++     L+   +   +  +LF  +L   A+ WF +L R+ + +W D
Sbjct: 1   MDSYDGATDPDEHIENIEVVLSYRSVRGAVKCKLFVTTLRRGAVTWFKNLRRNSIHSWSD 60

Query: 131 ICNAFNTQYHYNIEVDVTRRELETTKQKNNEPFSSFLSRWRAKAAQM 177
           +C  F T +  +     T   LE   Q  +EP   ++  +  +  Q+
Sbjct: 61  LCYEFTTHFTASRTQPKTVGSLEAIVQGRSEPLRDYIEMFNKEVVQV 107


>IMGA|Medtr5g105410.1 Retrotransposon gag protein
           chr05_pseudomolecule_IMGAG_V3 42332369-42331785 H
           EGN_Mt090430 20090702
          Length = 194

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 47/107 (43%)

Query: 71  MDKFDGTTCPTTHLKMYVGGLNPFGLNSELLAQLFQQSLTGAALRWFVSLDRSKMKNWED 130
           MD +DGT     H++    GL    +   +  +LF  +L   A+ W  +L R+ + +W D
Sbjct: 1   MDSYDGTIDMDEHIENIEAGLTYRSVQGAVKCKLFVTTLRRGAVTWLKNLRRNSIYSWSD 60

Query: 131 ICNAFNTQYHYNIEVDVTRRELETTKQKNNEPFSSFLSRWRAKAAQM 177
           +C  F T +  +         LE   Q  +EP    + R+  +  Q+
Sbjct: 61  LCYKFTTHFTASRMQPKMVAYLEAIVQGKSEPLRDNIGRFNKEVVQV 107


>IMGA|AC233661_6.1 Retrotransposon gag protein AC233661.2
           33103-33469 F EGN_Mt090430 20090702
          Length = 82

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 71  MDKFDGTTCPTTHLKMYVGGLNPFGLNSELLAQLFQQSLTGAALRWFVSLDRSKMKNWED 130
           MD +DGT+ P  H++     L    +   +  +LF  +L   A+ WF +L R+ + +W D
Sbjct: 1   MDSYDGTSDPDEHIENIEVVLTYRSVRGAVKCKLFVTTLRRGAMTWFKNLRRNSIGSWGD 60

Query: 131 ICNAFNTQY 139
           +C+ F T +
Sbjct: 61  LCHEFTTHF 69