Jatropha Genome Database

JcCA0003592.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003592.20 + phase: 0 /TE/pseudo/partial
         (435 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g059250.1 Retrotransposon gag protein chr03_pseudomol...    70   2e-12
IMGA|Medtr8g052750.1 hypothetical protein chr08_pseudomolecule_I...    57   2e-08
IMGA|Medtr7g046290.1 Retrotransposon gag protein chr07_pseudomol...    51   1e-06

>IMGA|Medtr3g059250.1 Retrotransposon gag protein
           chr03_pseudomolecule_IMGAG_V3 13301930-13300773 H
           EGN_Mt090430 20090702
          Length = 385

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 4/163 (2%)

Query: 96  LEDTPSGTASELEAQ--KMREKLELLERSITALKTHKEVVDMDS--LSLFPEARLPTKFK 151
           LED        +EA+  K+RE+LELL  ++T   T + +  M     +      +P  F+
Sbjct: 36  LEDRERELIHHMEARERKLREQLELLRNNVTGADTTRLMPKMFQPFSAEIQVVEIPRNFR 95

Query: 152 MPNMDKFDGTTCPKTHLKMYVGALNPFGLNSELFAQLFQQSLTGAALRWFVSLDRSKMKN 211
            P +D +DGT+ P  H+  +   +   G +  L  ++F  +L G A +W   L    + N
Sbjct: 96  EPTIDSYDGTSDPHGHVSTFQTQMFISGADDALSCKIFVGTLKGVAHKWIAGLPARSVTN 155

Query: 212 WEDICNAFNTQYHYNIEVDVTRRELETTKQKNNEPFSSFLSRW 254
           +ED+   F  Q+  NIE      +L   +Q+  E   S+L+R+
Sbjct: 156 FEDMATRFVAQFAANIEKPFLLADLFDIRQRPIESLKSYLARF 198


>IMGA|Medtr8g052750.1 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 11682193-11681927 H
           EGN_Mt090430 20090702
          Length = 88

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 141 FPEARLPTKF-KMPNMDKFDGTTCPKTHLKMYVGALNPFGLNSELFAQLFQQSLTGAALR 199
           F E R+PT   K P MD +DGTTCP  ++K     LN   +   +  +LF  +L      
Sbjct: 4   FEEVRIPTGLEKPPQMDPYDGTTCPDKNIKNIKSILNYRNIRGTVKCRLFATTLQKGGKS 63

Query: 200 WFVSLDRSKMKNWEDICNAF 219
           W+  L R  + +WE++C  F
Sbjct: 64  WYKILRRESIDSWEEVCRKF 83


>IMGA|Medtr7g046290.1 Retrotransposon gag protein
           chr07_pseudomolecule_IMGAG_V3 11333685-11336345 E
           EGN_Mt090430 20090702
          Length = 189

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%)

Query: 155 MDKFDGTTCPKTHLKMYVGALNPFGLNSELFAQLFQQSLTGAALRWFVSLDRSKMKNWED 214
           MD +DG T P  H++     L+   +   +  +LF  +L   A+ WF +L R+ + +W D
Sbjct: 1   MDSYDGATDPDEHIENIEVVLSYRSVRGAVKCKLFVTTLRRGAVTWFKNLRRNSIHSWSD 60

Query: 215 ICNAFNTQYHYNIEVDVTRRELETTKQKNNEPFSSFL 251
           +C  F T +  +     T   LE   Q  +EP   ++
Sbjct: 61  LCYEFTTHFTASRTQPKTVGSLEAIVQGRSEPLRDYI 97