Jatropha Genome Database

JcCA0003592.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003592.10 + phase: 1 /partial
         (98 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g014430.1 2-oxo acid dehydrogenase, lipoyl-binding si...   127   1e-30
IMGA|Medtr5g014430.2 2-oxo acid dehydrogenase, lipoyl-binding si...   127   2e-30
IMGA|Medtr4g114460.1 Glycine cleavage H-protein chr04_pseudomole...   106   4e-24
IMGA|Medtr5g014430.3 2-oxo acid dehydrogenase, lipoyl-binding si...    54   1e-08

>IMGA|Medtr5g014430.1 2-oxo acid dehydrogenase, lipoyl-binding site
           chr05_pseudomolecule_IMGAG_V3 4624135-4622416 E
           EGN_Mt090430 20090702
          Length = 166

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 67/74 (90%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATSDVNSPISGEIVEVN KL+  PG INSSPYE+GWMIK+KPS+PSEL SLL A
Sbjct: 93  AVESVKATSDVNSPISGEIVEVNDKLTGKPGLINSSPYEDGWMIKIKPSDPSELESLLGA 152

Query: 85  KAYTKFCEEEDAAH 98
           K YTKFCEEEDAAH
Sbjct: 153 KEYTKFCEEEDAAH 166


>IMGA|Medtr5g014430.2 2-oxo acid dehydrogenase, lipoyl-binding site
           chr05_pseudomolecule_IMGAG_V3 4624135-4622416 E
           EGN_Mt090430 20090702
          Length = 161

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 67/74 (90%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATSDVNSPISGEIVEVN KL+  PG INSSPYE+GWMIK+KPS+PSEL SLL A
Sbjct: 88  AVESVKATSDVNSPISGEIVEVNDKLTGKPGLINSSPYEDGWMIKIKPSDPSELESLLGA 147

Query: 85  KAYTKFCEEEDAAH 98
           K YTKFCEEEDAAH
Sbjct: 148 KEYTKFCEEEDAAH 161


>IMGA|Medtr4g114460.1 Glycine cleavage H-protein
           chr04_pseudomolecule_IMGAG_V3 26179066-26176460 E
           EGN_Mt090430 20090702
          Length = 155

 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 63/74 (85%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATSD+NSP+SG+++EVN +LS +P  +NSSPYE GW+IKV+ S+  EL  L+D+
Sbjct: 82  AVESVKATSDINSPVSGKVIEVNEELSNSPALVNSSPYENGWIIKVEMSDSGELDKLMDS 141

Query: 85  KAYTKFCEEEDAAH 98
           + YTKFCEEED++H
Sbjct: 142 EKYTKFCEEEDSSH 155


>IMGA|Medtr5g014430.3 2-oxo acid dehydrogenase, lipoyl-binding site
           chr05_pseudomolecule_IMGAG_V3 4624135-4622416 E
           EGN_Mt090430 20090702
          Length = 145

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 29/33 (87%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAI 57
           AVESVKATSDVNSPISGEIVEVN KL+  PG +
Sbjct: 93  AVESVKATSDVNSPISGEIVEVNDKLTGKPGLV 125