Jatropha Genome Database

JcCA0003212.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003212.20 - phase: 0 
         (151 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g025470.1 S15/NS1, RNA-binding; Ribosomal S13S15 N-te...   290   2e-79
IMGA|Medtr8g106910.1 S15/NS1, RNA-binding; Ribosomal S13S15 N-te...   282   4e-77
IMGA|Medtr5g012060.1 S15/NS1, RNA-binding; Ribosomal S13S15 N-te...   267   2e-72

>IMGA|Medtr4g025470.1 S15/NS1, RNA-binding; Ribosomal S13S15
           N-terminal chr04_pseudomolecule_IMGAG_V3 6055966-6059386
           F EGN_Mt090430 20090702
          Length = 151

 Score =  290 bits (742), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/151 (93%), Positives = 147/151 (97%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHS GKGIS+SALPYKRTP SWLKIS QDV++ ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSGGKGISSSALPYKRTPASWLKISTQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
           AQV++VTGNKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKAVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>IMGA|Medtr8g106910.1 S15/NS1, RNA-binding; Ribosomal S13S15
           N-terminal chr08_pseudomolecule_IMGAG_V3
           24121585-24123852 E EGN_Mt090430 20090702
          Length = 151

 Score =  282 bits (722), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 137/151 (90%), Positives = 144/151 (95%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHS GKGIS+SALPYKR+ P WLK S QDVE+ ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSGGKGISSSALPYKRSAPGWLKTSTQDVEETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
           AQV+ +TG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKFITGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>IMGA|Medtr5g012060.1 S15/NS1, RNA-binding; Ribosomal S13S15
           N-terminal chr05_pseudomolecule_IMGAG_V3 3379796-3382569
           E EGN_Mt090430 20090702
          Length = 187

 Score =  267 bits (682), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 138/141 (97%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHS+GKGIS+SALPYKRT PSWLKIS+ +V++ ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSKGKGISSSALPYKRTSPSWLKISSPEVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKY 141
           RIHRLARYYKKTKKLPPVWKY
Sbjct: 121 RIHRLARYYKKTKKLPPVWKY 141