Jatropha Genome Database
- JcCA0000872.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0000872.10 + phase: 2 /TE/partial
(819 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 193 2e-49
IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61 17375... 96 7e-20
IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V... 94 2e-19
IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse transc... 87 3e-17
IMGA|Medtr3g169290.1 Putative retroelement pol polyprotein, chr0... 75 1e-13
IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse transc... 71 2e-12
IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse transcri... 70 3e-12
IMGA|Medtr6g077290.1 Ribonuclease H, putative chr06_pseudomolecu... 69 8e-12
IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse transc... 61 2e-09
IMGA|Medtr4g047410.1 gag-pol polyprotein, putative chr04_pseudom... 55 1e-07
IMGA|Medtr4g047200.1 gag-pol polyprotein, putative chr04_pseudom... 55 1e-07
IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse transcrip... 52 1e-06
IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse transc... 51 2e-06
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 134/221 (60%), Gaps = 1/221 (0%)
Query: 283 SGKVLGFIVGPKGTTIYLDKIKAIQEMKSPKIEMQVKSFLGKIQYINMLISKLSIVCDPI 342
SGK+LGFIV KG + DK++AI+EM +P+ E QV+ FLG++ YI+ IS ++ C PI
Sbjct: 299 SGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPI 358
Query: 343 FKLLKKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILAXV 402
FKLL+K+QPV WND AFD IKNY PPIL P G LI+YL V D +G +L
Sbjct: 359 FKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQ 418
Query: 403 DR-ATSEKTIYFXXXXXXXXXXXXXXIERTCLAMVWATRKLSHYFQSYKVITVSRMDSVK 461
D E IY+ +E+TC A+ WA ++L HY ++ +SRMD +K
Sbjct: 419 DETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIK 478
Query: 462 YLYGTPSLVGKLTRWLIMLFEFDIEYVTKKTIEGQALTNFL 502
Y++ ++ GK+ RW ++L E+ I + T+K I+G L + L
Sbjct: 479 YIFEKAAVTGKIARWQMLLSEYYIVFKTQKAIKGSILADHL 519
>IMGA|AC135504_4.1 gag-pol polyprotein, related AC135504.61
17375-18058 H EGN_Mt090430 20090702
Length = 227
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 94/179 (52%), Gaps = 4/179 (2%)
Query: 325 IQYINMLISKLSIVCDPIFKLLKKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLL 384
+ Y++ I K + P KLL+K+ W D A +K S+PP+L P+ G +L
Sbjct: 2 LTYLSRFIVKSTQHALPFLKLLRKEIKFDWIDKCENALKHLKEILSAPPVLSRPEQGEVL 61
Query: 385 ILYLIVEDVEIGTILAXVDRATSEKTIYFXXXXXXXXXXXXXXIERTCLAMVWATRKLSH 444
LYL + + +L + A +K++YF IE+ LA++ A+++L
Sbjct: 62 YLYLSISSTAVSAVLI-RETAEGQKSVYFTSKKLLGPETRNQKIEKVALALLTASQRLRQ 120
Query: 445 YFQSYKVITVSRMDS-VKYLYGTPSLVGKLTRWLIMLFEFDIEYVTKKTIEGQALTNFL 502
YF ++ VI ++D ++ + G P++ G++ +W + L EFDI Y ++K ++ Q +FL
Sbjct: 121 YFFAHTVIV--KIDQPIRQILGRPNVAGRMMKWSLELSEFDIHYESRKALKAQVFADFL 177
>IMGA|Medtr3g059210.1 Ribonuclease H chr03_pseudomolecule_IMGAG_V3
13291307-13288982 H EGN_Mt090430 20090702
Length = 695
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 2/180 (1%)
Query: 294 KGTTIYLDKIKAIQEMKSPKIEMQVKSFLGKIQYINMLISKLSIVCDPIFKLLKKDQPVK 353
+G + +K KAI +M+SP +V+ G+I + +S + P F+LL K++
Sbjct: 5 RGVEVNPEKCKAIMDMRSPTDAKEVQKLTGRIASLTRFLSCSADKNLPFFQLLPKNENFC 64
Query: 354 WNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILAXVDRATSEKTIYF 413
W + AF K+K + ++PPIL PKL LILYL V + + L R +K +YF
Sbjct: 65 WTEECEGAFQKLKEFLTTPPILVKPKLSAPLILYLAVSEHACSSALVQEVR-KEQKPVYF 123
Query: 414 XXXXXXXXXXXXXXIERTCLAMVWATRKLSHYFQSYKVITVSRMDSVKYLYGTPSLVGKL 473
IE+ LA+V + RKL YFQS+ +I V ++ + P L G++
Sbjct: 124 TSKVLHGAEVRYQKIEKVALALVSSARKLRPYFQSHTII-VRTNQPIRQVLQKPDLAGRM 182
>IMGA|Medtr3g061740.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr03_pseudomolecule_IMGAG_V3 14037305-14035821 H
EGN_Mt090430 20090702
Length = 479
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 5/209 (2%)
Query: 284 GKVLGFIVGPKGTTIYLDKIKAIQEMKSPKIEMQVKSFLGKIQYINMLISKLSIVCDPIF 343
GK LGF++ G DK +AI M+SP +V+ G++ ++ +S F
Sbjct: 190 GKFLGFLLTRWGIEANTDKCQAIINMRSPSNVKEVQQLTGRLAALSRCLSCAGDKAFSFF 249
Query: 344 KLLKKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILAXVD 403
+KK + +W AF +IK + SS P+L P ++ LYL++ + + T+L +
Sbjct: 250 ASIKKKEKFEWTAECEDAFQQIKMFLSSLPLLQRPNKNAIIFLYLVISENAMSTVLV-EE 308
Query: 404 RATSEKTIYFXXXXXXXXXXXXXXIERTCLAMVWATRKLSHYFQSYKVITVSRMDSVKYL 463
EK IY+ IE LA+V RKL YFQS+K++ S ++ +
Sbjct: 309 SEVGEKPIYYVSRVFKGAKLPYQKIECLALAVVTTARKLRPYFQSHKIVVKSNY-PIRQV 367
Query: 464 YGTPSLVGKLTRWLI---MLFEFDIEYVT 489
G P L G++ I +L +F +E +
Sbjct: 368 LGKPDLAGRMVAGNIKSQVLADFVVELTS 396
>IMGA|Medtr3g169290.1 Putative retroelement pol polyprotein,
chr03_pseudomolecule_IMGAG_V3 44105220-44104602 H
EGN_Mt090430 20090702
Length = 181
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 283 SGKVLGFIVGPKGTTIYLDKIKAIQEMKSPKIEMQVKSFLGKIQYINMLISKLSIVCDPI 342
+GK LGF + +G DK AI E+ +P + ++ G + ++ ++K + P
Sbjct: 14 AGKFLGFYLTERGIEANRDKCHAITELPTPHSKKCIQILNGMLIALSRFVAKSAEHALPF 73
Query: 343 FKLLKKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILAXV 402
FKLL+K+ W D A + +K S+PP+L P G +L YL V +G
Sbjct: 74 FKLLRKETKFGWTDECENALNHLKETLSAPPVLSRPYEGEVLYQYLSVSSNALGP----- 128
Query: 403 DRATSEKTIYFXXXXXXXXXXXXXXIERTCLAMVWATRKLSHYFQSYKVITVSRMDSVKY 462
+T Y I++ LA++ A R+L YF ++ + V ++
Sbjct: 129 ------ETRY-------------QRIDKVALALLIAARRLRQYFLAH-TVEVRTDQPIRQ 168
Query: 463 LYGTPSLVGKLTR 475
+ G P + G++ +
Sbjct: 169 ILGRPDVAGRMMK 181
>IMGA|Medtr4g041210.1 RNA-directed DNA polymerase (Reverse
transcriptase); Peptidase aspartic, active site;
Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H
EGN_Mt090430 20090702
Length = 1435
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 9/219 (4%)
Query: 287 LGFIVGPKGTTIYLDKIKAIQEMKSPKIEMQVKSFLGKIQYINMLISKLSIVCDPIFKLL 346
LG V +G + K+KA+ + +P Q++ FLG Y I + V P+ LL
Sbjct: 783 LGHTVSGQGVAMDCSKVKAVLDWPTPTNLKQLRGFLGLTGYYRRFIQGYAAVASPLTDLL 842
Query: 347 KKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILAXVDRAT 406
KKD KW ++ +AF+++K + P+L P +L IG +L +
Sbjct: 843 KKDS-FKWTENAQLAFERLKQSLTKAPVLSLPDFSKSFVLETDASGFGIGAVL-----SQ 896
Query: 407 SEKTIYFXXXXXXXXXXXXXXIERTCLAMVWATRKLSHYFQSYKVITVSRMDSVKYLYGT 466
+ I F R A+ A K HY ++ I + S+K L
Sbjct: 897 GKHPIAFFSKKLSPRMQKQSAYVRELYAISEAISKFRHYLIGHQFIIRTDQKSLKSLTDQ 956
Query: 467 PSLVGKLTRWL--IMLFEFDIEY-VTKKTIEGQALTNFL 502
+ WL + + F IEY K I AL+ L
Sbjct: 957 AIQTPEQQNWLHKFLGYNFTIEYKPGKDNIAADALSRSL 995
>IMGA|AC229695_21.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase,
Ribonuclease H fold AC229695.5 96798-94993 H
EGN_Mt090430 20090702
Length = 555
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 6/211 (2%)
Query: 287 LGFIVGPKGTTIYLDKIKAIQEMKSPKIEMQVKSFLGKIQYINMLISKLSIVCDPIFKLL 346
LG I+ +G K+ + PK ++ FLG Y + + P+ LL
Sbjct: 63 LGHIISAQGVAADQKKVDVMLTWPRPKDLKSLRGFLGLTGYYRRFVRNYGSIAKPLTHLL 122
Query: 347 KKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILAXVDRAT 406
KKD + WN+ ++FD +K + PIL P ++ + +G IL
Sbjct: 123 KKDNFL-WNEEAQLSFDTLKKAMAELPILSVPNFSIPFVIETDASNTGLGAILM-----Q 176
Query: 407 SEKTIYFXXXXXXXXXXXXXXIERTCLAMVWATRKLSHYFQSYKVITVSRMDSVKYLYGT 466
+ + F ER +A+V+A +K HY I + S+K+L
Sbjct: 177 QGRPVAFLSQPLSERAQRKSIYERELMAIVFAVQKWRHYLMGNHFIIHTDQKSLKFLQDQ 236
Query: 467 PSLVGKLTRWLIMLFEFDIEYVTKKTIEGQA 497
L +W L FD E + K + +A
Sbjct: 237 RVLGADQFKWTSKLMGFDFEIIYKPGSDNRA 267
>IMGA|Medtr6g077290.1 Ribonuclease H, putative
chr06_pseudomolecule_IMGAG_V3 15274861-15275193 H
EGN_Mt090430 20090702
Length = 110
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 346 LKKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILAXVDR- 404
L K+QP+ WND AFD IKNY PPIL P G LILYL V D +G +L D
Sbjct: 19 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 78
Query: 405 ATSEKTIYFXXXXXXXXXXXXXXIERTCLAMV 436
E IY+ +E+TC A+
Sbjct: 79 GKKEHAIYYLSKKFTDCETRYTMLEKTCCALA 110
>IMGA|Medtr2g021830.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
5672480-5674573 E EGN_Mt090430 20090702
Length = 253
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 283 SGKVLGFIVGPKGTTIYLDKIKAIQEMKSPKIEMQVKSFLGKIQYINMLISKLS 336
SGK+LGF+V KG + DK++AI+EM +P+ E QV+ FLG++ YI+ IS ++
Sbjct: 167 SGKLLGFVVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMT 220
>IMGA|Medtr4g047410.1 gag-pol polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 11043520-11043164 H
EGN_Mt090430 20090702
Length = 118
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 341 PIFKLLKKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILA 400
P F LLKK+ +W + A +KN S+PP+L P G L LYL V + L
Sbjct: 18 PFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAVSGTLN 77
Query: 401 XVDRATSEKTIYFXXXXXXXXXXXXXXIERTCLAMVWATR 440
++ +K YF IE+ LA+V A R
Sbjct: 78 -IETQEGQKPTYFTSKALLGPETRYQKIEKVALALVTAAR 116
>IMGA|Medtr4g047200.1 gag-pol polyprotein, putative
chr04_pseudomolecule_IMGAG_V3 10908500-10908144 H
EGN_Mt090430 20090702
Length = 118
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 341 PIFKLLKKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILA 400
P F LLKK+ +W + A +KN S+PP+L P G L LYL V + L
Sbjct: 18 PFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAVSGTLN 77
Query: 401 XVDRATSEKTIYFXXXXXXXXXXXXXXIERTCLAMVWATR 440
++ +K YF IE+ LA+V A R
Sbjct: 78 -IETQEGQKPTYFTSKALLGPETRYQKIEKVALALVTAAR 116
>IMGA|AC234026_1.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC234026.1 2154-4412 H EGN_Mt090430
20090702
Length = 705
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 6/211 (2%)
Query: 287 LGFIVGPKGTTIYLDKIKAIQEMKSPKIEMQVKSFLGKIQYINMLISKLSIVCDPIFKLL 346
LG ++ KG + +KI+ I E PK V+ FLG Y + + P+ +L
Sbjct: 351 LGHVISGKGVAVDPEKIRCILEWPEPKNVKGVRGFLGLTGYYRKFVKDYGKIAKPLTELT 410
Query: 347 KKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILAXVDRAT 406
KKD W+ AF+++K+ +SP +L P + IG +L
Sbjct: 411 KKDG-FSWSPTAAEAFNRLKHIMTSPLVLVLPNFSLPFEIECDAAGRGIGAVL-----MQ 464
Query: 407 SEKTIYFXXXXXXXXXXXXXXIERTCLAMVWATRKLSHYFQSYKVITVSRMDSVKYLYGT 466
+++ + + E+ +A+V + HY + S+K+
Sbjct: 465 NKQPVAYFSKALSAGNLSKSVYEKELMALVLCIQHWRHYLLGKAFTVHTDHKSLKHFLQQ 524
Query: 467 PSLVGKLTRWLIMLFEFDIEYVTKKTIEGQA 497
WL L + E K +E +A
Sbjct: 525 RVTSPDQQCWLAKLLGYQFEVKYKPGLENKA 555
>IMGA|Medtr3g162430.1 RNA-directed DNA polymerase (Reverse
transcriptase); Retrotransposon gag protein;
Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 42425246-42419198 E
EGN_Mt090430 20090702
Length = 1584
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 287 LGFIVGPKGTTIYLDKIKAIQEMKSPKIEMQVKSFLGKIQYINMLISKLSIVCDPIFKLL 346
LG I+ KG DKI+AI +P+ ++ FLG I + + + + P+ LL
Sbjct: 758 LGHIISHKGVQPDEDKIQAILSWPTPRSLTTLRGFLGLISFYRRFVRHYATLAAPLTDLL 817
Query: 347 KKDQPVKWNDHYHIAFDKIKNYFSSPPILCSPKLGNLLILYLIVEDVEIGTILA 400
+ + N AF K+K ++ P+L P L ++ V IG +L+
Sbjct: 818 RSTK-FTLNATAEAAFSKLKEQITTTPVLILPNFSKLFVVETDASAVAIGAVLS 870