Jatropha Genome Database
- JcCA0000831.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0000831.20 - phase: 0
(475 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr7g021740.1 Ribulose bisphosphate carboxylase, large ch... 921 0.0
IMGA|Medtr7g145780.1 Ribulose bisphosphate carboxylase, large ch... 921 0.0
IMGA|Medtr6g059160.1 Ribulose bisphosphate carboxylase, large ch... 917 0.0
IMGA|Medtr3g043560.1 Ribulose bisphosphate carboxylase, large ch... 417 e-117
IMGA|Medtr3g043740.1 Ribulose bisphosphate carboxylase, large ch... 320 7e-88
IMGA|Medtr5g083310.1 Ribulose bisphosphate carboxylase, large ch... 144 9e-35
IMGA|Medtr5g094350.1 Ribulose bisphosphate carboxylase, large ch... 126 3e-29
IMGA|Medtr5g094160.1 Ribulose bisphosphate carboxylase, large ch... 122 3e-28
IMGA|Medtr5g009780.1 Ribulose bisphosphate carboxylase, large ch... 110 1e-24
IMGA|Medtr7g099570.1 Ribulose bisphosphate carboxylase, large ch... 63 4e-10
>IMGA|Medtr7g021740.1 Ribulose bisphosphate carboxylase, large chain
chr07_pseudomolecule_IMGAG_V3 5293161-5291497 F
EGN_Mt090430 20090702
Length = 475
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/475 (92%), Positives = 454/475 (95%)
Query: 1 MSPQTETKASVGFKAGVKDYKLTYYTPEYQTKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
MSPQTETKA+VGFKAGVKDY+LTYYTP+Y+TKDTDILAAFRV+PQ
Sbjct: 1 MSPQTETKATVGFKAGVKDYRLTYYTPDYETKDTDILAAFRVSPQPGVPAEEAGAAVAAE 60
Query: 61 SSTGTWTTVWTDGLTSLDRYKGRCYDIEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120
SSTGTWTTVWTDGLTSLDRYKGRCY IEPVAGEE+Q+IAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEESQFIAYVAYPLDLFEEGSVTNMFTSI 120
Query: 121 VGNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180
VGNVFGFKALRALRLEDLRIP AY KTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180
Query: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240
SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240
Query: 241 NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAV 300
NATAGTCE+M+KRAVFARELGVPIVMHDYLTGGFTANT+LAHYCRDNGLLLHIHRAMHA
Sbjct: 241 NATAGTCEDMMKRAVFARELGVPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAA 300
Query: 301 IDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSR 360
IDRQKNHGMHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSR
Sbjct: 301 IDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSR 360
Query: 361 GIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420
GI+FTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN
Sbjct: 361 GIFFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420
Query: 421 RVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 475
RVALEACVQARNEGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFE AMDT+
Sbjct: 421 RVALEACVQARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFELPAMDTI 475
>IMGA|Medtr7g145780.1 Ribulose bisphosphate carboxylase, large chain
chr07_pseudomolecule_IMGAG_V3 34745514-34748239 E
EGN_Mt090430 20090702
Length = 475
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/475 (92%), Positives = 455/475 (95%)
Query: 1 MSPQTETKASVGFKAGVKDYKLTYYTPEYQTKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
MSPQTETKA+VGFKAGVKDY+LTYYTP+Y+TKDTDILAAFRV+PQ
Sbjct: 1 MSPQTETKATVGFKAGVKDYRLTYYTPDYETKDTDILAAFRVSPQPGVPAEEAGAAVAAE 60
Query: 61 SSTGTWTTVWTDGLTSLDRYKGRCYDIEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120
SSTGTWTTVWTDGLTSLDRYKGRCY IEPVAGEE+Q+IAYV YPLDLFEEGSVTNMFTSI
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEESQFIAYVTYPLDLFEEGSVTNMFTSI 120
Query: 121 VGNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180
VGNVFGFKALRALRLEDLRIP AY KTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180
Query: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240
SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240
Query: 241 NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAV 300
NATAGTCE+M+KRAVFARELGVPIVMHDYLTGGFTANT+LAHYCRDNGLLLHIHRAMHAV
Sbjct: 241 NATAGTCEDMMKRAVFARELGVPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAV 300
Query: 301 IDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSR 360
IDRQKNHGMHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSR
Sbjct: 301 IDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSR 360
Query: 361 GIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420
GI+FT+DWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN
Sbjct: 361 GIFFTRDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420
Query: 421 RVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 475
RVALEACVQARNEGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFEF AMDT+
Sbjct: 421 RVALEACVQARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 475
>IMGA|Medtr6g059160.1 Ribulose bisphosphate carboxylase, large chain
chr06_pseudomolecule_IMGAG_V3 10597229-10595152 E
EGN_Mt090430 20090702
Length = 475
Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/475 (92%), Positives = 454/475 (95%)
Query: 1 MSPQTETKASVGFKAGVKDYKLTYYTPEYQTKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
MSPQTETKA+VGFKAGVKDY+LTYYTP+Y+TKDTDILAAFRV+PQ
Sbjct: 1 MSPQTETKATVGFKAGVKDYRLTYYTPDYETKDTDILAAFRVSPQPGVPAEEAGAAVAAE 60
Query: 61 SSTGTWTTVWTDGLTSLDRYKGRCYDIEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSI 120
SSTGTWTTVWTDGLTSLDRYKGR Y IEPVAGEE+Q+IAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKGRSYHIEPVAGEESQFIAYVAYPLDLFEEGSVTNMFTSI 120
Query: 121 VGNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 180
VGNVFGFKALRALRLEDLRIP AY KTFQGPPH IQVERDKLNKYGRPLLGCTIKPKLGL
Sbjct: 121 VGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHRIQVERDKLNKYGRPLLGCTIKPKLGL 180
Query: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240
SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL
Sbjct: 181 SAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240
Query: 241 NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAV 300
NATAGTCE+M+KRAVFARELGVPIVMHDYLTGGFTANT+LAHYCRDNGLLLHIHRAMHAV
Sbjct: 241 NATAGTCEDMMKRAVFARELGVPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAV 300
Query: 301 IDRQKNHGMHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSR 360
IDRQKNHGMHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSR
Sbjct: 301 IDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSR 360
Query: 361 GIYFTQDWVSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420
GI+FTQDWVSLPGVLPVASGGIHVW+MPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN
Sbjct: 361 GIFFTQDWVSLPGVLPVASGGIHVWYMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVAN 420
Query: 421 RVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 475
RVALEACVQARNEGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFEF AMDT+
Sbjct: 421 RVALEACVQARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 475
>IMGA|Medtr3g043560.1 Ribulose bisphosphate carboxylase, large chain
chr03_pseudomolecule_IMGAG_V3 11933697-11932683 E
EGN_Mt090430 20090702
Length = 248
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/209 (93%), Positives = 203/209 (97%)
Query: 62 STGTWTTVWTDGLTSLDRYKGRCYDIEPVAGEENQYIAYVAYPLDLFEEGSVTNMFTSIV 121
+ GTWTTVWT+GLTSLDRYKGRCY IEPVAGEE+Q+IAYVAYP+DLFEEGSVTNMFTSIV
Sbjct: 22 TIGTWTTVWTNGLTSLDRYKGRCYHIEPVAGEESQFIAYVAYPIDLFEEGSVTNMFTSIV 81
Query: 122 GNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLS 181
GNVFGFKALRALRLEDLRIP AY KTFQGPPHGIQVERDKLNKYG PLLGCTIKPKLGLS
Sbjct: 82 GNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGCPLLGCTIKPKLGLS 141
Query: 182 AKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLN 241
AKNYGRAVYECLRGGLDFTK DENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLN
Sbjct: 142 AKNYGRAVYECLRGGLDFTKVDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLN 201
Query: 242 ATAGTCEEMIKRAVFARELGVPIVMHDYL 270
ATAGTCE+M+KRAVFARELGVPIVMHDYL
Sbjct: 202 ATAGTCEDMMKRAVFARELGVPIVMHDYL 230
>IMGA|Medtr3g043740.1 Ribulose bisphosphate carboxylase, large chain
chr03_pseudomolecule_IMGAG_V3 11996267-11996953 E
EGN_Mt090430 20090702
Length = 177
Score = 320 bits (821), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 153/163 (93%), Positives = 158/163 (96%)
Query: 313 VLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLP 372
V A R+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSRGI+FTQDWVSLP
Sbjct: 15 VSATRSRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIFFTQDWVSLP 74
Query: 373 GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 432
GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN
Sbjct: 75 GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 134
Query: 433 EGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 475
EGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFEF AMDT+
Sbjct: 135 EGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 177
>IMGA|Medtr5g083310.1 Ribulose bisphosphate carboxylase, large chain
chr05_pseudomolecule_IMGAG_V3 31587000-31585573 E
EGN_Mt090430 20090702
Length = 74
Score = 144 bits (363), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 69/74 (93%), Positives = 69/74 (93%)
Query: 116 MFTSIVGNVFGFKALRALRLEDLRIPTAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIK 175
MFTSIVGNVFGFKAL ALRLEDLRIP AY KTFQ PPHGIQVERDKLNKYGRPLLGCTIK
Sbjct: 1 MFTSIVGNVFGFKALCALRLEDLRIPVAYVKTFQDPPHGIQVERDKLNKYGRPLLGCTIK 60
Query: 176 PKLGLSAKNYGRAV 189
PKLGLSAKNYGR V
Sbjct: 61 PKLGLSAKNYGRTV 74
>IMGA|Medtr5g094350.1 Ribulose bisphosphate carboxylase, large
chain; Protein kinase chr05_pseudomolecule_IMGAG_V3
37306478-37313393 E EGN_Mt090430 20090702
Length = 681
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Query: 394 FGDDSVLQFGGGTL-GHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWS 452
DS L + + PWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EA+KWS
Sbjct: 599 IAQDSYLAYSKKYICNKPWGNAPGAVANRVALEACVQARNEGRDLACEGNEIICEATKWS 658
Query: 453 PELAAACEVWKEIKFEFQAMDTL 475
PELAAACEV KEIKF+F AMDT+
Sbjct: 659 PELAAACEVGKEIKFKFSAMDTI 681
>IMGA|Medtr5g094160.1 Ribulose bisphosphate carboxylase, large
chain; Protein kinase chr05_pseudomolecule_IMGAG_V3
37134480-37136663 E EGN_Mt090430 20090702
Length = 283
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Query: 394 FGDDSVLQFGGGTL-GHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWS 452
DS L + + PWGNAPGAVANRVALEACVQARNEGRDLA EGNEI EA+KWS
Sbjct: 201 IAQDSYLAYSKKYICNKPWGNAPGAVANRVALEACVQARNEGRDLACEGNEISCEATKWS 260
Query: 453 PELAAACEVWKEIKFEFQAMDTL 475
PELAAACEV KEIKF+F AMDT+
Sbjct: 261 PELAAACEVGKEIKFKFSAMDTI 283
>IMGA|Medtr5g009780.1 Ribulose bisphosphate carboxylase, large chain
chr05_pseudomolecule_IMGAG_V3 2222616-2223326 H
EGN_Mt090430 20090702
Length = 61
Score = 110 bits (276), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 151 PPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDF 199
PPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNY RAVYECLRGGLDF
Sbjct: 10 PPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYDRAVYECLRGGLDF 58
>IMGA|Medtr7g099570.1 Ribulose bisphosphate carboxylase, large chain
chr07_pseudomolecule_IMGAG_V3 22242386-22242756 E
EGN_Mt090430 20090702
Length = 61
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/33 (81%), Positives = 28/33 (84%)
Query: 429 QARNEGRDLAREGNEIIREASKWSPELAAACEV 461
ARNEGRDL REGNEII EA+KWSPEL ACEV
Sbjct: 29 HARNEGRDLTREGNEIICEATKWSPELVVACEV 61