Jatropha Genome Database

JcCA0000051.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000051.40 - phase: 0 /partial
         (176 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g043780.1 Ribosomal protein L2 chr03_pseudomolecule_I...   273   2e-74
IMGA|Medtr4g042420.1 Translation protein SH3-like chr04_pseudomo...   243   2e-65
IMGA|Medtr4g160370.1 Translation protein SH3-like chr04_pseudomo...   174   2e-44
IMGA|Medtr4g062130.1 Translation protein SH3-like chr04_pseudomo...   174   2e-44
IMGA|Medtr2g018780.1 Ribosomal protein L2 chr02_pseudomolecule_I...   114   2e-26
IMGA|Medtr8g129350.1 Translation protein SH3-like chr08_pseudomo...    90   5e-19
IMGA|Medtr4g104460.1 Translation protein SH3-like chr04_pseudomo...    88   2e-18
IMGA|Medtr7g084800.1 Elongation factor P-like protein YeiP chr07...    77   4e-15
IMGA|Medtr5g021750.1 Elongation factor P-like protein YeiP chr05...    76   1e-14
IMGA|Medtr1g005770.1 Translation protein SH3-like chr01_pseudomo...    69   1e-12
IMGA|Medtr1g005280.1 Translation protein SH3-like chr01_pseudomo...    68   2e-12
IMGA|Medtr8g039650.1 Translation protein SH3-like chr08_pseudomo...    57   6e-09
IMGA|Medtr6g093800.1 hypothetical protein chr06_pseudomolecule_I...    49   1e-06

>IMGA|Medtr3g043780.1 Ribosomal protein L2
           chr03_pseudomolecule_IMGAG_V3 12001684-12002286 F
           EGN_Mt090430 20090702
          Length = 142

 Score =  273 bits (699), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/142 (95%), Positives = 140/142 (98%)

Query: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 94
           MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 1   MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60

Query: 95  VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 154
           VGN GVNQKSLGRAG+K WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP+TPWGYPA
Sbjct: 61  VGNVGVNQKSLGRAGAKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPA 120

Query: 155 LGRRSRKRNKYSDNLILRRRTK 176
           LGRRSRK+NKYSDNLILRRR+K
Sbjct: 121 LGRRSRKKNKYSDNLILRRRSK 142


>IMGA|Medtr4g042420.1 Translation protein SH3-like
           chr04_pseudomolecule_IMGAG_V3 10122950-10123569 F
           EGN_Mt090430 20090702
          Length = 134

 Score =  243 bits (621), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/128 (95%), Positives = 125/128 (97%)

Query: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 94
           MPLGTAIHNIEITLGKGGQLARA GAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ
Sbjct: 1   MPLGTAIHNIEITLGKGGQLARAPGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 60

Query: 95  VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 154
           VGN GVNQKSLGRAG+K WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP+TPWGYPA
Sbjct: 61  VGNVGVNQKSLGRAGAKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPA 120

Query: 155 LGRRSRKR 162
           LGRRSRK+
Sbjct: 121 LGRRSRKK 128


>IMGA|Medtr4g160370.1 Translation protein SH3-like
           chr04_pseudomolecule_IMGAG_V3 40635566-40636162 H
           EGN_Mt090430 20090702
          Length = 114

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/99 (90%), Positives = 92/99 (92%)

Query: 45  EITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNTGVNQKS 104
           +ITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS EVRLISKNCSATV QVGN GVNQKS
Sbjct: 8   QITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSEEVRLISKNCSATVEQVGNVGVNQKS 67

Query: 105 LGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGR 143
           LGRA +K WLGKRPVVRGVVMN VDHPH GGEGRAPIGR
Sbjct: 68  LGRAEAKRWLGKRPVVRGVVMNLVDHPHSGGEGRAPIGR 106


>IMGA|Medtr4g062130.1 Translation protein SH3-like
           chr04_pseudomolecule_IMGAG_V3 11953187-11952076 E
           EGN_Mt090430 20090702
          Length = 169

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 88/89 (98%)

Query: 8   KPYALEEACTVWEEVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK 67
           KPYALEEACTVWE VLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK
Sbjct: 22  KPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK 81

Query: 68  EGKSATLKLPSGEVRLISKNCSATVGQVG 96
           EGKSATLKLPSGEVRLISKNCSATVGQVG
Sbjct: 82  EGKSATLKLPSGEVRLISKNCSATVGQVG 110


>IMGA|Medtr2g018780.1 Ribosomal protein L2
           chr02_pseudomolecule_IMGAG_V3 5033227-5031310 E
           EGN_Mt090430 20090702
          Length = 175

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/129 (51%), Positives = 82/129 (63%), Gaps = 6/129 (4%)

Query: 33  TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSA--TLKLPSGEVRLISKNCSA 90
           + M +GT IHNIE+  G+GG+L RAAG  AK++ KE  SA   ++LPSG  +LI   C A
Sbjct: 37  SSMRIGTIIHNIELNPGQGGKLVRAAGTNAKIL-KEPTSAYVLIQLPSGVKKLIDTRCRA 95

Query: 91  TVGQVGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPA 147
           TVG V N     + L +AG   WL +RPVVRGV MNPVDHPHGGGEG++       K   
Sbjct: 96  TVGTVSNPTHGDRKLRKAGHSRWLNRRPVVRGVAMNPVDHPHGGGEGKSKSSGGWGKGSR 155

Query: 148 TPWGYPALG 156
           TPWG P  G
Sbjct: 156 TPWGKPTKG 164


>IMGA|Medtr8g129350.1 Translation protein SH3-like
          chr08_pseudomolecule_IMGAG_V3 30531114-30531382 E
          EGN_Mt090430 20090702
          Length = 73

 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/51 (92%), Positives = 48/51 (94%)

Query: 35 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS 85
          MPLGTAIHNI+ITL KGGQLARAAGAVAKLIAKE KSATLKLPS EVRLIS
Sbjct: 1  MPLGTAIHNIKITLEKGGQLARAAGAVAKLIAKERKSATLKLPSEEVRLIS 51


>IMGA|Medtr4g104460.1 Translation protein SH3-like
           chr04_pseudomolecule_IMGAG_V3 22800015-22800632 H
           EGN_Mt090430 20090702
          Length = 129

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 49/59 (83%)

Query: 40  AIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNT 98
           AIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIS      +    NT
Sbjct: 70  AIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISLGGEQQLETAANT 128


>IMGA|Medtr7g084800.1 Elongation factor P-like protein YeiP
           chr07_pseudomolecule_IMGAG_V3 18390586-18392282 F
           EGN_Mt090430 20090702
          Length = 259

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 15/113 (13%)

Query: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATV 92
           +P G  I N+E  +G  G  ARA+G  A +I+   +  ++ +KLPSG  +++  +C A +
Sbjct: 107 IPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMI 166

Query: 93  GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 136
           GQV   G  +K + +AG+          CW    P VRGV MNPV+HPHGGG 
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGN 215


>IMGA|Medtr5g021750.1 Elongation factor P-like protein YeiP
           chr05_pseudomolecule_IMGAG_V3 8355322-8353110 F
           EGN_Mt090430 20090702
          Length = 258

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 62/113 (54%), Gaps = 15/113 (13%)

Query: 35  MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAK--EGKSATLKLPSGEVRLISKNCSATV 92
           +P G  I N+E  +G  G  AR +G  A +I+   +  ++ +KLPSG  +++   C A +
Sbjct: 107 IPEGAVICNVEHHVGDRGAFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSECRAMI 166

Query: 93  GQVGNTGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGGE 136
           GQV   G  +K + +AG+          CW    P VRGV MNPV+HPHGGG 
Sbjct: 167 GQVAGGGRTEKPMLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGGN 215


>IMGA|Medtr1g005770.1 Translation protein SH3-like
           chr01_pseudomolecule_IMGAG_V3 159454-158199 H
           EGN_Mt090430 20090702
          Length = 163

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 37/41 (90%)

Query: 70  KSATLKLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGS 110
           + ATLKLPSGEVRLISKN SATV QVGN GVNQKSLGRAG+
Sbjct: 34  RGATLKLPSGEVRLISKNSSATVRQVGNVGVNQKSLGRAGA 74


>IMGA|Medtr1g005280.1 Translation protein SH3-like
           chr01_pseudomolecule_IMGAG_V3 93613-94129 E EGN_Mt090430
           20090702
          Length = 76

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 37/41 (90%)

Query: 70  KSATLKLPSGEVRLISKNCSATVGQVGNTGVNQKSLGRAGS 110
           + ATLKLPSGEVRLISKN SATV QVGN GVNQKSLGRAG+
Sbjct: 34  RGATLKLPSGEVRLISKNSSATVRQVGNVGVNQKSLGRAGA 74


>IMGA|Medtr8g039650.1 Translation protein SH3-like
           chr08_pseudomolecule_IMGAG_V3 8350927-8351750 E
           EGN_Mt090430 20090702
          Length = 52

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/30 (83%), Positives = 27/30 (90%)

Query: 119 VVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 148
           +VRGVVMNPVDHPHGGGEGRAPI +KK  T
Sbjct: 10  LVRGVVMNPVDHPHGGGEGRAPIDKKKKKT 39


>IMGA|Medtr6g093800.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 20397938-20401904 E
           EGN_Mt090430 20090702
          Length = 107

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 25/28 (89%), Gaps = 1/28 (3%)

Query: 145 KPATPWGYPALG-RRSRKRNKYSDNLIL 171
           KP+T WGYPALG RRSRK NKYSDNLIL
Sbjct: 48  KPSTLWGYPALGRRRSRKGNKYSDNLIL 75