Jatropha Genome Database

JcCA0000041.60
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000041.60 + phase: 0 /partial
         (188 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g019440.1 CemA chr05_pseudomolecule_IMGAG_V3 7246870-...   250   4e-67
IMGA|Medtr3g127560.1 CemA chr03_pseudomolecule_IMGAG_V3 32373525...   167   3e-42

>IMGA|Medtr5g019440.1 CemA chr05_pseudomolecule_IMGAG_V3
           7246870-7247410 E EGN_Mt090430 20090702
          Length = 172

 Score =  250 bits (638), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 128/169 (75%), Positives = 141/169 (83%), Gaps = 3/169 (1%)

Query: 2   KRKAFIPLLYLTSIVFLPWWISFFSFLFNKSFESWVINWCNTSKSETFLNDIQEKSILEK 61
           K+KAFIPL  LTSIVFLPW ISF    F KS ESW+ NW NT +SE FLN IQEK+IL+K
Sbjct: 3   KKKAFIPLTCLTSIVFLPWCISF---TFKKSLESWITNWWNTKQSEIFLNIIQEKTILKK 59

Query: 62  FIELEELVRLDEMIKEYPETHLQGFRTGIHKETIQLIKMHNEDRIHTILHFSTNIICFVI 121
            IE EEL  LDEM+KEYPETH Q  R  I+KETIQLI+ +N+DRIHTILHF TNIICF+I
Sbjct: 60  LIEFEELFLLDEMLKEYPETHFQNLRMEIYKETIQLIETNNQDRIHTILHFCTNIICFLI 119

Query: 122 LSGYSILSNEELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSPH 170
           LSGYS+  N+ELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHS H
Sbjct: 120 LSGYSVRGNQELIILNSWVQEFLYNLSDTIKAFSILLLTDLCIGFHSTH 168


>IMGA|Medtr3g127560.1 CemA chr03_pseudomolecule_IMGAG_V3
           32373525-32374409 E EGN_Mt090430 20090702
          Length = 127

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 99/120 (82%), Gaps = 1/120 (0%)

Query: 25  FSFLFNKSFESWVINWCNTSKSETFLNDIQEKSILEKFIELEELVRLDEMIKEYPETHLQ 84
           FS LF KS ESW+ NW NT +SE FLN IQEK+IL+K IE EEL  LDEM+KEYPETH Q
Sbjct: 9   FSMLF-KSLESWITNWWNTKQSEIFLNIIQEKTILKKLIEFEELFLLDEMLKEYPETHFQ 67

Query: 85  GFRTGIHKETIQLIKMHNEDRIHTILHFSTNIICFVILSGYSILSNEELIILNSWVQEFL 144
             R  I+KETIQLI+ +N+DRIHTILHF TNIICF+ILSGYSI  N+ELIIL+SWV+EFL
Sbjct: 68  NLRMEIYKETIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILDSWVKEFL 127