Jatropha Genome Database
- JcCA0000041.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0000041.10 + phase: 0 /partial
(167 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr6g059160.1 Ribulose bisphosphate carboxylase, large ch... 337 2e-93
IMGA|Medtr7g145780.1 Ribulose bisphosphate carboxylase, large ch... 337 2e-93
IMGA|Medtr7g021740.1 Ribulose bisphosphate carboxylase, large ch... 336 3e-93
IMGA|Medtr3g043740.1 Ribulose bisphosphate carboxylase, large ch... 316 4e-87
IMGA|Medtr5g094350.1 Ribulose bisphosphate carboxylase, large ch... 128 1e-30
IMGA|Medtr5g094160.1 Ribulose bisphosphate carboxylase, large ch... 123 5e-29
IMGA|Medtr7g099570.1 Ribulose bisphosphate carboxylase, large ch... 60 4e-10
>IMGA|Medtr6g059160.1 Ribulose bisphosphate carboxylase, large chain
chr06_pseudomolecule_IMGAG_V3 10597229-10595152 E
EGN_Mt090430 20090702
Length = 475
Score = 337 bits (863), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/167 (95%), Positives = 166/167 (99%)
Query: 1 MHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDW 60
MHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSRGI+FTQDW
Sbjct: 309 MHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIFFTQDW 368
Query: 61 VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 120
VSLPGVLPVASGGIHVW+MPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV
Sbjct: 369 VSLPGVLPVASGGIHVWYMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 428
Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
QARNEGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFEF AMDT+
Sbjct: 429 QARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 475
>IMGA|Medtr7g145780.1 Ribulose bisphosphate carboxylase, large chain
chr07_pseudomolecule_IMGAG_V3 34745514-34748239 E
EGN_Mt090430 20090702
Length = 475
Score = 337 bits (863), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/167 (95%), Positives = 166/167 (99%)
Query: 1 MHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDW 60
MHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSRGI+FT+DW
Sbjct: 309 MHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIFFTRDW 368
Query: 61 VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 120
VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV
Sbjct: 369 VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 428
Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
QARNEGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFEF AMDT+
Sbjct: 429 QARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 475
>IMGA|Medtr7g021740.1 Ribulose bisphosphate carboxylase, large chain
chr07_pseudomolecule_IMGAG_V3 5293161-5291497 F
EGN_Mt090430 20090702
Length = 475
Score = 336 bits (862), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 160/167 (95%), Positives = 165/167 (98%)
Query: 1 MHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDW 60
MHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSRGI+FTQDW
Sbjct: 309 MHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIFFTQDW 368
Query: 61 VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 120
VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV
Sbjct: 369 VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 428
Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
QARNEGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFE AMDT+
Sbjct: 429 QARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFELPAMDTI 475
>IMGA|Medtr3g043740.1 Ribulose bisphosphate carboxylase, large chain
chr03_pseudomolecule_IMGAG_V3 11996267-11996953 E
EGN_Mt090430 20090702
Length = 177
Score = 316 bits (809), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 153/163 (93%), Positives = 158/163 (96%)
Query: 5 VLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLP 64
V A R+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSRGI+FTQDWVSLP
Sbjct: 15 VSATRSRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIFFTQDWVSLP 74
Query: 65 GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 124
GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN
Sbjct: 75 GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 134
Query: 125 EGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
EGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFEF AMDT+
Sbjct: 135 EGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 177
>IMGA|Medtr5g094350.1 Ribulose bisphosphate carboxylase, large
chain; Protein kinase chr05_pseudomolecule_IMGAG_V3
37306478-37313393 E EGN_Mt090430 20090702
Length = 681
Score = 128 bits (321), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/66 (89%), Positives = 62/66 (93%)
Query: 102 PWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEF 161
PWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EA+KWSPELAAACEV KEIKF+F
Sbjct: 616 PWGNAPGAVANRVALEACVQARNEGRDLACEGNEIICEATKWSPELAAACEVGKEIKFKF 675
Query: 162 QAMDTL 167
AMDT+
Sbjct: 676 SAMDTI 681
>IMGA|Medtr5g094160.1 Ribulose bisphosphate carboxylase, large
chain; Protein kinase chr05_pseudomolecule_IMGAG_V3
37134480-37136663 E EGN_Mt090430 20090702
Length = 283
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Query: 86 FGDDSVLQFGGGTLGH-PWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWS 144
DS L + + + PWGNAPGAVANRVALEACVQARNEGRDLA EGNEI EA+KWS
Sbjct: 201 IAQDSYLAYSKKYICNKPWGNAPGAVANRVALEACVQARNEGRDLACEGNEISCEATKWS 260
Query: 145 PELAAACEVWKEIKFEFQAMDTL 167
PELAAACEV KEIKF+F AMDT+
Sbjct: 261 PELAAACEVGKEIKFKFSAMDTI 283
>IMGA|Medtr7g099570.1 Ribulose bisphosphate carboxylase, large chain
chr07_pseudomolecule_IMGAG_V3 22242386-22242756 E
EGN_Mt090430 20090702
Length = 61
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/33 (81%), Positives = 28/33 (84%)
Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEV 153
ARNEGRDL REGNEII EA+KWSPEL ACEV
Sbjct: 29 HARNEGRDLTREGNEIICEATKWSPELVVACEV 61