Jatropha Genome Database

JMS23C14r.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JMS23C14r.10 - phase: 0 /partial
         (167 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g132760.1 Aminoacyl-tRNA synthetase, class I; Bifunct...   185   8e-48
IMGA|Medtr4g132760.3 Aminoacyl-tRNA synthetase, class I; Bifunct...   181   1e-46
IMGA|Medtr4g132760.2 Aminoacyl-tRNA synthetase, class I; Bifunct...   181   2e-46
IMGA|Medtr3g104620.1 Aspartate kinase region; Aminoacyl-tRNA syn...   174   2e-44

>IMGA|Medtr4g132760.1 Aminoacyl-tRNA synthetase, class I;
           Bifunctional aspartokinase/homoserine dehydrogenase I
           chr04_pseudomolecule_IMGAG_V3 31631381-31644243 E
           EGN_Mt090430 20090702
          Length = 917

 Score =  185 bits (470), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 92/134 (68%), Positives = 110/134 (82%), Gaps = 3/134 (2%)

Query: 24  ESKEKVCIPRGDAWSVHKFGGTCVGTSERIKNVAEIIVNDGSEGKLVVVSAMSKVTDMMY 83
           E KE   + +GD+WSVHKFGGTC+G+S+RIKNV +I++ND SE KLVVVSAMSKVTDMMY
Sbjct: 77  EEKE---LSKGDSWSVHKFGGTCMGSSQRIKNVGDIVLNDDSERKLVVVSAMSKVTDMMY 133

Query: 84  DLIYKAQSRDDSYIAAVDAVFEKHRLTAMDLLDGEDLASFLSRLHHDVNNLKAMLRAIYI 143
           DLI KAQSRD+SYI+++DAV EKH  TA D+LDGE LA FLS+LH D++NLKAMLRAIYI
Sbjct: 134 DLINKAQSRDESYISSLDAVLEKHSATAHDILDGETLAIFLSKLHEDISNLKAMLRAIYI 193

Query: 144 GIGPLFLSLLDHTV 157
           G G +  S  D  V
Sbjct: 194 GPGHVTESFTDFVV 207


>IMGA|Medtr4g132760.3 Aminoacyl-tRNA synthetase, class I;
           Bifunctional aspartokinase/homoserine dehydrogenase I
           chr04_pseudomolecule_IMGAG_V3 31631381-31644243 E
           EGN_Mt090430 20090702
          Length = 909

 Score =  181 bits (460), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 118/161 (73%), Gaps = 17/161 (10%)

Query: 17  LLAVLLDESKEKVCIPRGDAWSVHKFGGTCVGTSERIKNVAEIIVNDGSEGKLVVVSAMS 76
           + A L  E KE   + +GD+WSVHKFGGTC+G+S+RIKNV +I++ND SE KLVVVSAMS
Sbjct: 63  ICASLTVEEKE---LSKGDSWSVHKFGGTCMGSSQRIKNVGDIVLNDDSERKLVVVSAMS 119

Query: 77  KVTDMMYDLIYKAQSRDDSYIAAVDAVFEKHRLTAMDLLDGEDLASFLSRLHHDVNNLKA 136
           KVTDMMYDLI KAQSRD+SYI+++DAV EKH  TA D+LDGE LA FLS+LH D++NLKA
Sbjct: 120 KVTDMMYDLINKAQSRDESYISSLDAVLEKHSATAHDILDGETLAIFLSKLHEDISNLKA 179

Query: 137 MLRAIYI-------------GIGPLF-LSLLDHTVRVNGFD 163
           MLRAIYI             G G L+   +L   +R NG D
Sbjct: 180 MLRAIYIAGHVTESFTDFVVGHGELWSAQMLSLVIRKNGID 220


>IMGA|Medtr4g132760.2 Aminoacyl-tRNA synthetase, class I;
           Bifunctional aspartokinase/homoserine dehydrogenase I
           chr04_pseudomolecule_IMGAG_V3 31631381-31644243 E
           EGN_Mt090430 20090702
          Length = 916

 Score =  181 bits (458), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/154 (61%), Positives = 115/154 (74%), Gaps = 17/154 (11%)

Query: 24  ESKEKVCIPRGDAWSVHKFGGTCVGTSERIKNVAEIIVNDGSEGKLVVVSAMSKVTDMMY 83
           E KE   + +GD+WSVHKFGGTC+G+S+RIKNV +I++ND SE KLVVVSAMSKVTDMMY
Sbjct: 77  EEKE---LSKGDSWSVHKFGGTCMGSSQRIKNVGDIVLNDDSERKLVVVSAMSKVTDMMY 133

Query: 84  DLIYKAQSRDDSYIAAVDAVFEKHRLTAMDLLDGEDLASFLSRLHHDVNNLKAMLRAIYI 143
           DLI KAQSRD+SYI+++DAV EKH  TA D+LDGE LA FLS+LH D++NLKAMLRAIYI
Sbjct: 134 DLINKAQSRDESYISSLDAVLEKHSATAHDILDGETLAIFLSKLHEDISNLKAMLRAIYI 193

Query: 144 -------------GIGPLF-LSLLDHTVRVNGFD 163
                        G G L+   +L   +R NG D
Sbjct: 194 AGHVTESFTDFVVGHGELWSAQMLSLVIRKNGID 227


>IMGA|Medtr3g104620.1 Aspartate kinase region; Aminoacyl-tRNA
           synthetase, class I chr03_pseudomolecule_IMGAG_V3
           26062388-26055010 E EGN_Mt090430 20090702
          Length = 906

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 104/123 (84%)

Query: 22  LDESKEKVCIPRGDAWSVHKFGGTCVGTSERIKNVAEIIVNDGSEGKLVVVSAMSKVTDM 81
           +D + E+  +P+G+ WSVHKFGGTCVG+S RI NVA++I+ND SE KLVVVSAMSKVTDM
Sbjct: 62  VDVAVEEKKLPKGETWSVHKFGGTCVGSSARINNVADVIINDDSERKLVVVSAMSKVTDM 121

Query: 82  MYDLIYKAQSRDDSYIAAVDAVFEKHRLTAMDLLDGEDLASFLSRLHHDVNNLKAMLRAI 141
           MYDLI+KA+++D SYI+A+DAV EKH LTA +L DG+DLA+FLS LH DV NLKAML+AI
Sbjct: 122 MYDLIHKAEAQDKSYISALDAVEEKHSLTASELFDGDDLATFLSNLHQDVGNLKAMLQAI 181

Query: 142 YIG 144
            I 
Sbjct: 182 DIA 184