Jatropha Genome Database

JcSR479173f.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcSR479173f.10 + phase: 0 /partial
         (194 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00625                                                            361   e-100

>KJC_c00625 
          Length = 1832

 Score =  361 bits (182), Expect = e-100
 Identities = 185/186 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttagaaagtcttccagtaatggttgcaggtgtctggtctgaagaacagaattcacagctt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 ttagaaagtcttccagtaatggttgcaggtgtctggtctgaagaacagaattcacagctt 1502

                                                                        
Query: 61   gaggcaacaactcatttccgaaagctgctctctatagagcgcagtcctccaatcaatgaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 gaggcaacaactcatttccgaaagctgctctctatagagcgcagtcctccaatcaatgaa 1442

                                                                        
Query: 121  gttgtgcaagctggtgttgttcctcgtttcattgagttccttgcaaggaatgattttcca 180
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1441 gttgtgcaagctggtgttgttcctcgtttcattgagttccttgcaagggatgattttcca 1382

                  
Query: 181  cagctt 186
            ||||||
Sbjct: 1381 cagctt 1376