Jatropha Genome Database

JcSR397681f.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcSR397681f.10 - phase: 1 /partial
         (368 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01430                                                            646   0.0  

>KJC_c01430 
          Length = 1246

 Score =  646 bits (326), Expect = 0.0
 Identities = 340/342 (99%), Gaps = 2/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gggtgaagatcacttgagagaccctaaattccagttggatgccttcagataccgaacatc 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 623 gggtgaagatcacttgagagaccctaaattcca-ttggatgccttcagataccgaacatc 565

                                                                       
Query: 65  tcgactgcttcaaagtgttgctgtccgacttcgcaagcactctaaaagtcttggtagctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcgactgcttcaaagtgttgctgtccgacttcgcaagcactctaaaagtcttggtagctt 505

                                                                       
Query: 125 tggtgcttggaatcggtgcttgaatcaccttctcacacttgcagaatctcacgttgaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggtgcttggaatcggtgcttgaatcaccttctcacacttgcagaatctcacgttgaatc 445

                                                                       
Query: 185 cgtgatccttgcaaaatttattgaagctgtgcagaattgtcctgatgcaagctctcgagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgtgatccttgcaaaatttattgaagctgtgcagaattgtcctgatgcaagctctcgagc 385

                                                                       
Query: 245 tgctttaaaacttgtctgtga-tctttatgccttggaccggatctggaatgacattggaa 303
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgctttaaaacttgtctgtgactctttatgccttggaccggatctggaatgacattggaa 325

                                                     
Query: 304 cataccgcaatgttgactatgttgcaccaaacaaagctaagg 345
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cataccgcaatgttgactatgttgcaccaaacaaagctaagg 283