Jatropha Genome Database

JcPR13H21R2.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcPR13H21R2.10 + phase: 2 /pseudo/partial
         (327 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06333                                                            289   2e-78
KJC_c09840                                                             96   6e-20

>KJC_c06333 
          Length = 482

 Score =  289 bits (146), Expect = 2e-78
 Identities = 146/146 (100%)
 Strand = Plus / Minus

                                                                       
Query: 147 agactcaagggcgtgaatccattgctgccaaacttgttgcaaatttgattacagaagctg 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agactcaagggcgtgaatccattgctgccaaacttgttgcaaatttgattacagaagctg 231

                                                                       
Query: 207 gtgtaaaccgtgttcttgcttgtgaccttcactctgggcagtcaatggggtattttgaca 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gtgtaaaccgtgttcttgcttgtgaccttcactctgggcagtcaatggggtattttgaca 171

                                     
Query: 267 ttcctgtggatcatgtatatggtcag 292
           ||||||||||||||||||||||||||
Sbjct: 170 ttcctgtggatcatgtatatggtcag 145


>KJC_c09840 
          Length = 462

 Score = 95.6 bits (48), Expect = 6e-20
 Identities = 114/136 (83%)
 Strand = Plus / Minus

                                                                       
Query: 147 agactcaagggcgtgaatccattgctgccaaacttgttgcaaatttgattacagaagctg 206
           ||||| |||| |||||||| ||||| ||||||||||| |||||| | || ||||||||||
Sbjct: 220 agactgaaggtcgtgaatctattgcggccaaacttgtcgcaaatcttatcacagaagctg 161

                                                                       
Query: 207 gtgtaaaccgtgttcttgcttgtgaccttcactctgggcagtcaatggggtattttgaca 266
           ||| ||| || |||||||| ||||| ||||| || || ||||| ||||| |||||||| |
Sbjct: 160 gtgcaaatcgcgttcttgcctgtgatcttcattcaggccagtccatgggctattttgata 101

                           
Query: 267 ttcctgtggatcatgt 282
           || |||| || |||||
Sbjct: 100 tttctgttgaccatgt 85