Jatropha Genome Database

JcPR04JCLS5.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcPR04JCLS5.10 + phase: 1 /pseudo/partial
         (374 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03218                                                            644   0.0  

>KJC_c03218 
          Length = 1162

 Score =  644 bits (325), Expect = 0.0
 Identities = 353/357 (98%), Gaps = 4/357 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaaatcaatagtcctgattgcatagataaggttgccttaccagagaataaggttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gagaaatcaatagtcctgattgcatagataaggttgccttaccagagaataaggttcttc 758

                                                                       
Query: 61  aaagggactgctcaggagaaaggtatcaaaatggttgtgcccacatttctagccctacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aaagggactgctcaggagaaaggtatcaaaatggttgtgcccacatttctagccctacct 698

                                                                       
Query: 121 ctaaccctgaggtccctgatgatgggaacttggtatcaggctatgggtcaaatacaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctaaccctgaggtccctgatgatgggaacttggtatcaggctatgggtcaaatacaacat 638

                                                                       
Query: 181 tatgcaaagtctcactagaggaatttgaagaactgaaaacagagaaagataacatggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tatgcaaagtctcactagaggaatttgaagaactgaaaacagagaaagataacatggcca 578

                                                                       
Query: 241 tggatcttgctaggtgcactgaaaacctagaaatgaccaaatcccaattacatgaaaccg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tggatcttgctaggtgcactgaaaacctagaaatgaccaaatcccaattacatgaaaccg 518

                                                                    
Query: 301 agcagcttctagctagaagtctaaagctacaattgacttctgcaacagaagtcaaac 357
           |||||||||||||| |||| ||||||| ||||||||||||||| |||||||||||||
Sbjct: 517 agcagcttctagct-gaag-ctaaagc-acaattgacttctgc-acagaagtcaaac 465