Jatropha Genome Database

JcPR04GQDJ3.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcPR04GQDJ3.10 - phase: 0 /pseudo/partial
         (224 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07653                                                            274   8e-74
KJC_c11187                                                            212   3e-55

>KJC_c07653 
          Length = 516

 Score =  274 bits (138), Expect = 8e-74
 Identities = 138/138 (100%)
 Strand = Plus / Minus

                                                                       
Query: 75  acaggaaggagaagttgagactgatagaatgacagaacatagtggttctgttctaaggtc 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acaggaaggagaagttgagactgatagaatgacagaacatagtggttctgttctaaggtc 457

                                                                       
Query: 135 atcaagctttgatgataggttttcatcaagtcattcttcaatgtcgtgttggtccagcaa 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atcaagctttgatgataggttttcatcaagtcattcttcaatgtcgtgttggtccagcaa 397

                             
Query: 195 taccttagagttgttaga 212
           ||||||||||||||||||
Sbjct: 396 taccttagagttgttaga 379


>KJC_c11187 
          Length = 499

 Score =  212 bits (107), Expect = 3e-55
 Identities = 153/161 (95%), Gaps = 7/161 (4%)
 Strand = Plus / Plus

                                                                       
Query: 11  aaattgatgggtttcgtaatagtggatgaaactagtcgcacatagaccctgttaatgcat 70
           |||||||||||||||  ||| |||||||||||| ||||||||| ||||||||||||||||
Sbjct: 346 aaattgatgggtttc--aat-gtggatgaaact-gtcgcacat-gaccctgttaatgcat 400

                                                                       
Query: 71  gttcacaggaaggagaagttgagactgatagaatgacagaacatagtggttctgttctaa 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gttcacaggaaggagaagttgagactgatagaatgacagaacatagtggttctgttctaa 460

                                                    
Query: 131 ggtcatcaagctttgatgataggttttcatcaagtcattct 171
           ||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 461 ggtcancaagc-ttgatgatagg-tttcatcaagtcattct 499