Jatropha Genome Database

JcPR03AS3LV.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcPR03AS3LV.10 + phase: 1 /pseudo/partial
         (292 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01055                                                            303   1e-82

>KJC_c01055 
          Length = 1668

 Score =  303 bits (153), Expect = 1e-82
 Identities = 225/239 (94%), Gaps = 10/239 (4%)
 Strand = Plus / Minus

                                                                       
Query: 56  ggatcttggagaagtgatacacagggcgaatagcactcgctacgggctggctgcgggagt 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggatcttggagaagtgatacacagggcgaatagcactcgctacgggctggctgcgggagt 344

                                                                       
Query: 116 gtttacacagaacatagacacagctaacatcctgactcgtgccttgcgagttggaacagt 175
           ||| |||||||||||||||||| ||| |  ||||    ||||||||||||||||||||||
Sbjct: 343 gtt-acacagaacatagacacacctatcc-cctgt---gtgccttgcgagttggaacagt 289

                                                                       
Query: 176 atggattaattgactttgatgtgttcgacgctgcgattccttttggtggatataagatga 235
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atggattaattg-ctttgatgtgttcgacgctgcgattccttttggtggatataagatga 230

                                                                      
Query: 236 gtggacatggaagagagaagggta-ttacagtc-tagctaattacttagcaagtgaagg 292
           |||||||||||||||||||||||| |||||||| |||| |||||||| |||||||||||
Sbjct: 229 gtggacatggaagagagaagggtatttacagtcttagc-aattactt-gcaagtgaagg 173