Jatropha Genome Database

JcPR02GZLT5.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcPR02GZLT5.10 + phase: 0 /pseudo/partial
         (223 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04054                                                            180   9e-46
KJC_c12236                                                             56   4e-08

>KJC_c04054 
          Length = 995

 Score =  180 bits (91), Expect = 9e-46
 Identities = 112/115 (97%), Gaps = 3/115 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagcacctacattggaaagttgagatccaattttctgggaaccaagttcacaatctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gcagcacctacattggaaagttgagatccaattttctgggaaccaagttcacaatctatg 53

                                                                  
Query: 61  atgcacaccctccaaattctggagccaaagtttctaaaaagtcgctccaccagga 115
           ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 52  atgcacaccct-caaattct-gagccaaagtttct-aaaagtcgctccaccagga 1


>KJC_c12236 
          Length = 444

 Score = 56.0 bits (28), Expect = 4e-08
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 13  ttggaaagttgagatccaattttctgggaaccaagttcac 52
           |||| ||| ||||||| |||||||||||||||||||||||
Sbjct: 373 ttggtaagctgagatcaaattttctgggaaccaagttcac 412