Jatropha Genome Database

JcPR01C6D2I.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcPR01C6D2I.10 + phase: 0 /pseudo/partial
         (310 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01532                                                            323   1e-88

>KJC_c01532 
          Length = 1428

 Score =  323 bits (163), Expect = 1e-88
 Identities = 170/171 (99%), Gaps = 1/171 (0%)
 Strand = Plus / Minus

                                                                       
Query: 89  aggtaatttgtgcttttggaaggcttggaacaatgtttgggtgtgacaaatacaacatta 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aggtaatttgtgcttttggaaggcttggaacaatgtttgggtgtgacaaatacaacatta 563

                                                                       
Query: 149 aaccagaccttgtatctgtagcaaaggcgctttcttctgcatatttgccaattggaggtg 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaccagaccttgtatctgtagcaaaggcgctttcttctgcatatttgccaattggaggtg 503

                                                              
Query: 209 ttatggttagccccagaagtttcagatgttatacactcacaaagcaacaaa 259
           |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttatggttag-cccagaagtttcagatgttatacactcacaaagcaacaaa 453