Jatropha Genome Database

JcPR01AQ3WW.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcPR01AQ3WW.10 + phase: 0 /pseudo/partial
         (372 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07721                                                            555   e-158
KJC_c01777                                                             56   6e-08

>KJC_c07721 
          Length = 760

 Score =  555 bits (280), Expect = e-158
 Identities = 336/344 (97%), Gaps = 8/344 (2%)
 Strand = Plus / Plus

                                                                       
Query: 32  agatgaataaaaaggtggttaaaattgatgggtttgagaacgttaccccttttgacgaga 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 agatgaataaaaaggtggttaaaattgatgggtttgagaacgttaccccttttgacgaga 191

                                                                       
Query: 92  aatcgttgcagaaagctgtagcaaatcaacctgtcagtgttgccattgaagccagtggca 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aatcgttgcagaaagctgtagcaaatcaacctgtcagtgttgccattgaagccagtggca 251

                                                                       
Query: 152 tggactttacagttctatcaatctggtgtgtttactggcgaatgtggtttcggcattagt 211
           ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 252 tgg-ctttacagttctatcaatctggtgtgtttactggcgaatgtgg-ttcggcattag- 308

                                                                       
Query: 212 atcatggagttagtaatagttggatatggaactgaaaatggaactgattattggattgtt 271
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atcatggag-tagtaatagttggatatggaactgaaaatggaactgattattggattgtt 367

                                                                       
Query: 272 agaaattcatggggtccc-gatggggtgaaaatggatatat-aaggatggaacgtaatgt 329
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 368 agaaattcatggggtcccggatggggtgaaaatggatatataaaggatggaacgtaatgt 427

                                                       
Query: 330 ag-taatacatatagaggcaaaatgtggaattgcaatgcaatct 372
           || |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 428 agttaatacatatagaggc-aaatgtggaattgcaatgcaatct 470


>KJC_c01777 
          Length = 1112

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 88  gagaaatcgttgcagaaagctgtagcaaatcaacctgtcagtgttgccattgaagc 143
           |||||||| ||| |||| ||||| |||||||| || || |||||||||||||||||
Sbjct: 716 gagaaatccttgaagaaggctgtggcaaatcagccagttagtgttgccattgaagc 661