Jatropha Genome Database

JcCD0162764.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0162764.10 + phase: 1 /partial/short
         (143 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02077                                                            268   3e-72

>KJC_c02077 
          Length = 1255

 Score =  268 bits (135), Expect = 3e-72
 Identities = 142/143 (99%), Gaps = 1/143 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    aaatggagggaatgatgagcaagcttaggagtttggacgcctatccgaaaatcaacgagg 60
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1043 aaatggagggaatgatgagcaagcttaggagtt-ggacgcctatccgaaaatcaacgagg 985

                                                                        
Query: 61   acttctacagccgtacattctccggcggtgttatcactatcgcctcttctattgtcatgc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984  acttctacagccgtacattctccggcggtgttatcactatcgcctcttctattgtcatgc 925

                                   
Query: 121  ttctcctcttcatctctgagctc 143
            |||||||||||||||||||||||
Sbjct: 924  ttctcctcttcatctctgagctc 902