Jatropha Genome Database

JcCD0145641.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0145641.10 + phase: 1 /pseudo/partial/short
         (151 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12639                                                            196   1e-50

>KJC_c12639 
          Length = 258

 Score =  196 bits (99), Expect = 1e-50
 Identities = 108/110 (98%), Gaps = 1/110 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctacggttctcttgcagagatgaaggagctgaagaaagttgcaagaaaaactgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 150 ttctctacggttctcttgcagagatgaaggagctgaagaaagttgcaagaaaaactg-tt 208

                                                             
Query: 61  tagatacaaactccaatgatattattcatagagttgtccctcactatcac 110
           ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 209 tagatacaaactccaatgatattattcatagagttgtccctnactatcac 258