Jatropha Genome Database

JcCD0139939.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0139939.10 - phase: 0 /partial
         (168 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00150                                                            303   7e-83
KJC_c12538                                                            127   9e-30

>KJC_c00150 
          Length = 1583

 Score =  303 bits (153), Expect = 7e-83
 Identities = 165/168 (98%), Gaps = 2/168 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtagctcaccatttgttttctacaatgccacattatcatgcaatggaggctacaaatgcc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 gtagctcaccatttgttttctacaatgccacattatcatgcaatggaggctacaaatgcc 1222

                                                                        
Query: 61   ataaaaccaattctgggagaatattaccaattcgacaggactcctttcttcaaggcaatg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1223 ataaaaccaattctgggagaatattaccaattcgacaggactcctttcttcaaggcaatg 1282

                                                            
Query: 121  tggagagagggcaaaaagagtgcatttacgttgaaccagatgatgctg 168
            ||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 1283 tggagagagg--caaaagagtgcatttacgttgaaccagatgatgctg 1328


>KJC_c12538 
          Length = 77

 Score =  127 bits (64), Expect = 9e-30
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                       
Query: 54  aaatgccataaaaccaattctgggagaatattaccaattcgacaggactcctttcttcaa 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaatgccataaaaccaattctgggagaatattaccaattcgacaggactcctttcttcaa 60

               
Query: 114 ggca 117
           ||||
Sbjct: 61  ggca 64