Jatropha Genome Database

JcCD0121598.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0121598.10 + phase: 2 /partial
         (476 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01330                                                            912   0.0  

>KJC_c01330 
          Length = 1636

 Score =  912 bits (460), Expect = 0.0
 Identities = 474/476 (99%), Gaps = 2/476 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gctcaccgccgtcgtgacagggctcgtaagaggcttagcagaaatatttgcaaatatcat 60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 793  gctcaccgccgtcgtgacagggctcgtaagaggctt-gcagaaatatttgcaaatatcat 851

                                                                        
Query: 61   agcttctcgtaaacttgctggcaaatcagagaatgacatgctgcagtccttcatagactc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  agcttctcgtaaacttgctggcaaatcagagaatgacatgctgcagtccttcatagactc 911

                                                                        
Query: 121  aaagtacaaagatggtcggccaacaactgattctgagattacaggcttgctcatcgctgc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  aaagtacaaagatggtcggccaacaactgattctgagattacaggcttgctcatcgctgc 971

                                                                        
Query: 181  tctctttgctggtcaacacaccagttccatcacctctacttggacaggggcatacctctt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  tctctttgctggtcaacacaccagttccatcacctctacttggacaggggcatacctctt 1031

                                                                        
Query: 241  ccgatacaaggagtacttatctgctgtattggaggagcagaaaaccctgatgaagaagca 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 ccgatacaaggagtacttatctgctgtattggaggagcagaaaaccctgatgaagaagca 1091

                                                                        
Query: 301  tggaaacaaggttgatcatgatattttgtctgcgatggatgtcctgtatcgctgcattaa 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 tggaaacaaggttgatcatgatattttgtctgcgatggatgtcctgtatcgctgcattaa 1151

                                                                        
Query: 361  ggaagccttaagacttcatcctccattgataatgcttctacgtagctctcacagtgattt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1152 ggaagccttaagacttcatcctccattgataatgcttctacgtagctctcacagtga-tt 1210

                                                                    
Query: 421  tagcgtgactgccagagacggaaaagaatatgacatcccaaagggccatatcgttg 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 tagcgtgactgccagagacggaaaagaatatgacatcccaaagggccatatcgttg 1266