Jatropha Genome Database

JcCD0119024.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0119024.10 - phase: 0 /pseudo/partial
         (338 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00051                                                            607   e-174
KJC_s19404                                                            159   5e-39

>KJC_c00051 
          Length = 1105

 Score =  607 bits (306), Expect = e-174
 Identities = 334/338 (98%), Gaps = 4/338 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttattagacagtatgggctatcaaaaggaaccaatgaggctatgtttgtaattgaagcat 613

                                                                       
Query: 61  ataggaccttacgtgaccgtgggccatacccggcccatcaagtcctcaaggattttggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 612 ataggaccttacgtgaccgtgggccatacccggcccatcaagtcctcaaggattt-ggag 554

                                                                       
Query: 121 ggcacttttcggattttgtggtttatgacactaaagctggacatgtcttttgctgctctg 180
           |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 553 ggcacttt-cggattt-gtggtttatgacactaaagctggacatgtcttt-gctgctctg 497

                                                                       
Query: 181 ggtgcagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggtgcagaagaaggggtggaaatgtactggggaattgcaggtgatggttctgttgtaata 437

                                                                       
Query: 241 tctgacaacttggagggcataaaaggaagctgtgcaaagtcatttgcaccatttccaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctgacaacttggagggcataaaaggaagctgtgcaaagtcatttgcaccatttccaaaa 377

                                                 
Query: 301 gggtgcatgttccatagtgaacaagggttgatgagttt 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gggtgcatgttccatagtgaacaagggttgatgagttt 339


>KJC_s19404 
          Length = 445

 Score =  159 bits (80), Expect = 5e-39
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                       
Query: 259 ataaaaggaagctgtgcaaagtcatttgcaccatttccaaaagggtgcatgttccatagt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaaaggaagctgtgcaaagtcatttgcaccatttccaaaagggtgcatgttccatagt 60

                               
Query: 319 gaacaagggttgatgagttt 338
           ||||||||||||||||||||
Sbjct: 61  gaacaagggttgatgagttt 80