Jatropha Genome Database

JcCD0116228.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0116228.10 - phase: 1 /partial
         (187 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00953                                                            371   e-103

>KJC_c00953 
          Length = 3088

 Score =  371 bits (187), Expect = e-103
 Identities = 187/187 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atggaactccagtacataaagattatgtggtgctcattcctggcgggagcccccagagtg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1731 atggaactccagtacataaagattatgtggtgctcattcctggcgggagcccccagagtg 1672

                                                                        
Query: 61   atatgtggcttgcacttcatccaaatccggagttgaagtcccagtattatgatgcactct 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 atatgtggcttgcacttcatccaaatccggagttgaagtcccagtattatgatgcactct 1612

                                                                        
Query: 121  tgaatggagtggagatatttaagattgccagtgctgatggtaatcttgctgggcctaatc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 tgaatggagtggagatatttaagattgccagtgctgatggtaatcttgctgggcctaatc 1552

                   
Query: 181  caacacc 187
            |||||||
Sbjct: 1551 caacacc 1545