Jatropha Genome Database

JcCD0108263.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0108263.10 - phase: 2 /pseudo/partial
         (326 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03444                                                            260   2e-69

>KJC_c03444 
          Length = 647

 Score =  260 bits (131), Expect = 2e-69
 Identities = 150/154 (97%), Gaps = 3/154 (1%)
 Strand = Plus / Minus

                                                                       
Query: 125 agacaaaaggatggtgcagaacctgataaggcaccagcatcagagaggaccctcaagtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 agacaaaaggatggtgcagaacctgataaggcaccagcatcagagaggaccctcaagtct 588

                                                                       
Query: 185 cgggctattcttgccagacaagtaaatggagttgttgctgacc--gcagtaggtcctgta 242
           ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||
Sbjct: 587 cgggctattcttgccagac-agtaaatggagttgttgctgaccaggcagtaggtcctgta 529

                                             
Query: 243 gcagatgctgagaaagtcacagcccctggtaact 276
           ||||||||||||||||||||||||||||| ||||
Sbjct: 528 gcagatgctgagaaagtcacagcccctgggaact 495