Jatropha Genome Database

JcCD0100451.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0100451.10 + phase: 0 /pseudo/partial
         (442 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03048                                                            523   e-148

>KJC_c03048 
          Length = 844

 Score =  523 bits (264), Expect = e-148
 Identities = 304/311 (97%), Gaps = 6/311 (1%)
 Strand = Plus / Minus

                                                                       
Query: 132 gtgaataaattgccccaaatctatcaacgccttggtcttgagtatgatgagaaggtgcta 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gtgaataaattgccccaaatctatcaacgccttggtcttgagtatgatgagaaggtgcta 754

                                                                       
Query: 192 ccctcaattggcaatgaggttttgaaggctgtggttgcacagttcaatgctgaccagctc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ccctcaattggcaatgaggttttgaaggctgtggttgcacagttcaatgctgaccagctc 694

                                                                       
Query: 252 ctcacagaacgtccgcatgtatcagctctggtccgtgactctcttatcaagcgcgcaaag 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ctcacagaacgtccgcatgtatcagctctggtccgtgactctcttatcaagcgcgcaaag 634

                                                                       
Query: 312 gatttcaacattctgcttggaagatgtggcaatcacccacttgtcttataggagtggtac 371
           |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||   
Sbjct: 633 gatttcaacattctgc-tggaagatgtggcaatcacccacttgtcttat-ggagtgg--a 578

                                                                       
Query: 372 gttctcgaagggctgtggagacaaaagcaagtggcgcagcaggaagctgagaggtccaag 431
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gttctc-aagggctgtggag-caaaagcaagtggcgcagcaggaagctgagaggtccaag 520

                      
Query: 432 ttcattgtcat 442
           |||||||||||
Sbjct: 519 ttcattgtcat 509