Jatropha Genome Database

JcCD0071482.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0071482.10 - phase: 1 /pseudo/partial
         (227 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05692                                                            369   e-102

>KJC_c05692 
          Length = 826

 Score =  369 bits (186), Expect = e-102
 Identities = 193/194 (99%), Gaps = 1/194 (0%)
 Strand = Plus / Minus

                                                                       
Query: 34  cagaatacgaccagccggagaaccaccatctcctaggggctgcgcatgcggcagctgcag 93
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 650 cagaatacgaccagccggagaaccaccatctcctaggg-ctgcgcatgcggcagctgcag 592

                                                                       
Query: 94  ttggtactatggttgtctttcagggcgggataggtcctgctgggcattctacggatgatc 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttggtactatggttgtctttcagggcgggataggtcctgctgggcattctacggatgatc 532

                                                                       
Query: 154 tctatgtgctggacttgaccaatgataaattcaagtggcaccgagtggttgtacaaggac 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tctatgtgctggacttgaccaatgataaattcaagtggcaccgagtggttgtacaaggac 472

                         
Query: 214 agggtcctgggcct 227
           ||||||||||||||
Sbjct: 471 agggtcctgggcct 458