Jatropha Genome Database

JcCD0054045.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0054045.10 + phase: 1 /TE/partial
         (646 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11316                                                            430   e-120

>KJC_c11316 
          Length = 373

 Score =  430 bits (217), Expect = e-120
 Identities = 224/225 (99%), Gaps = 1/225 (0%)
 Strand = Plus / Plus

                                                                       
Query: 423 gttgatactgatcatgttagtgttcatattgatgaggcacagcttgatcaaccacttgac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttgatactgatcatgttagtgttcatattgatgaggcacagcttgatcaaccacttgac 60

                                                                       
Query: 483 atttcacccattcttcctcttgttgattccactgatgagaggcatgctaaaggtgcacag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttcacccattcttcctcttgttgattccactgatgagaggcatgctaaaggtgcacag 120

                                                                       
Query: 543 cagtggcagaatactattactggggtgggtcaaagatttagtagcgttcatgaatttcgt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagtggcagaatactattactggggtgggtcaaagatttagtagcgttcatgaatttcgt 180

                                                        
Query: 603 gaatcattgcg-taaatatgccattgcacatcagtttgcctttag 646
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 gaatcattgcgttaaatatgccattgcacatcagtttgcctttag 225