Jatropha Genome Database

JcCD0053272.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0053272.10 + phase: 0 /pseudo/partial
         (531 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03863                                                            589   e-168

>KJC_c03863 
          Length = 841

 Score =  589 bits (297), Expect = e-168
 Identities = 304/305 (99%), Gaps = 1/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 52  cagattgtcaaggtattggagttaattggaaagaaagaagggctgcagcttccacctgga 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cagattgtcaaggtattggagttaattggaaagaaagaagggctgcagcttccacctgga 246

                                                                       
Query: 112 tttgctgcccgtatagccgaaaaatcaaatcgaagtttaaggagggctatactttcattt 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttgctgcccgtatagccgaaaaatcaaatcgaagtttaaggagggctatactttcattt 186

                                                                       
Query: 172 gagacttgtcgcgtccaacagtatccttttacaagtaatcaagcaatacctccaatggac 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gagacttgtcgcgtccaacagtatccttttacaagtaatcaagcaatacctccaatggac 126

                                                                       
Query: 232 tgggaggaatatgtttctgaaatagctactgatataatgagggagcagagtcctaaaaag 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgggaggaatatgtttctgaaatagctactgatataatgagggagcagagtcctaaaaag 66

                                                                       
Query: 292 ctttttcaggttcgagggaaattgtacgaactgctaattaattgtattcctccagagatt 351
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ctttttca-gttcgagggaaattgtacgaactgctaattaattgtattcctccagagatt 7

                
Query: 352 atttt 356
           |||||
Sbjct: 6   atttt 2