Jatropha Genome Database

JcCD0049678.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCD0049678.10 + phase: 2 /pseudo/partial
         (1575 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04568                                                             92   5e-18

>KJC_c04568 
          Length = 884

 Score = 91.7 bits (46), Expect = 5e-18
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                        
Query: 929  aatatcaaagcagtcatcctggaccttttcgttgctggaagtgagacgtcatcaacaacc 988
            |||||||| ||||||||||||||  |||||||||| || |||||||| ||||||||||| 
Sbjct: 147  aatatcaaggcagtcatcctggatattttcgttgcgggtagtgagacatcatcaacaaca 88

                                      
Query: 989  gtagaatgggcaatgtcagaagtgct 1014
            ||||||||||| ||||| ||| ||||
Sbjct: 87   gtagaatgggcgatgtccgaaatgct 62



 Score = 73.9 bits (37), Expect = 1e-12
 Identities = 88/105 (83%)
 Strand = Plus / Minus

                                                                       
Query: 412 ttataacttcttagacattgcttattcaccgtatgaagattactggagacagttgaggaa 471
           ||||||||||  ||||||||||| |||||| |||| |||||||||||||||| || | ||
Sbjct: 683 ttataacttcacagacattgctttttcaccatatgcagattactggagacagctgcgaaa 624

                                                        
Query: 472 aatttgcaccgtagaattgctaagtgcaaagcgtgtgcaatcatt 516
           ||| ||||   | ||||||||||| ||||| || ||||| |||||
Sbjct: 623 aatctgcatactcgaattgctaagcgcaaaacgcgtgcagtcatt 579