Jatropha Genome Database

JcCB1005111.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB1005111.20 + phase: 0 
         (207 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00500                                                            161   8e-40
KJC_c00186                                                            115   4e-26

>KJC_c00500 
          Length = 1361

 Score =  161 bits (81), Expect = 8e-40
 Identities = 168/197 (85%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatgatgacatcaggtgaagctgtcaaatacaagagctcatacgatgcattctctcag 60
           ||||||||||| || |||||||||||||| |||||||| ||    ||||| |||||||||
Sbjct: 296 atgatgatgacctctggtgaagctgtcaagtacaagagttctcttgatgccttctctcag 237

                                                                       
Query: 61  atccttaagaatgagggagccaaatctctcttcaagggtgctggtgcaaatatcctccgc 120
           ||| | ||||||||||| ||||| ||||||||||||||||| || ||||| || ||||| 
Sbjct: 236 atcttgaagaatgagggtgccaagtctctcttcaagggtgcaggagcaaacattctccgt 177

                                                                       
Query: 121 gcgattgctggagctggtgttcttgctggatatgacaagcttcagatgattgttttcgga 180
           || |||||||| |||||||| |||||||| ||||||||| | ||| ||||||| ||||| 
Sbjct: 176 gctattgctggtgctggtgtgcttgctggttatgacaagttgcagctgattgtcttcggc 117

                            
Query: 181 aagaagtacggttctgg 197
           |||||||| || |||||
Sbjct: 116 aagaagtatggatctgg 100


>KJC_c00186 
          Length = 1454

 Score =  115 bits (58), Expect = 4e-26
 Identities = 166/202 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgatgatgacatcaggtgaagctgtcaaatacaagagctcatacgatgcattctctcag 60
            ||||||||||| ||||| |||||||| || ||||||||||| |  |||||||| ||||||
Sbjct: 997  atgatgatgacctcaggagaagctgtgaagtacaagagctctttggatgcattttctcag 1056

                                                                        
Query: 61   atccttaagaatgagggagccaaatctctcttcaagggtgctggtgcaaatatcctccgc 120
            ||| | |||||||| ||  | ||||| ||||||||||| ||||||||||| ||||| || 
Sbjct: 1057 atcatcaagaatgaagggactaaatccctcttcaagggagctggtgcaaacatccttcgt 1116

                                                                        
Query: 121  gcgattgctggagctggtgttcttgctggatatgacaagcttcagatgattgttttcgga 180
            ||  | || || |||||||| ||||| || |||||||| |||||| | ||||| || || 
Sbjct: 1117 gctgtagcaggtgctggtgtgcttgccggttatgacaaacttcagcttattgtctttggc 1176

                                  
Query: 181  aagaagtacggttctggcggag 202
            ||||| || || ||||||||||
Sbjct: 1177 aagaaatatggatctggcggag 1198