Jatropha Genome Database

JcCB0985511.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0985511.10 + phase: 1 /partial
         (305 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01901                                                            605   e-173

>KJC_c01901 
          Length = 1303

 Score =  605 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtaagtgattacagacaatcccttcagttccaaaatttgaatgaggagaagagaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgtaagtgattacagacaatcccttcagttccaaaatttgaatgaggagaagagaaaca 311

                                                                       
Query: 61  tacacatggaggttattagaggtggtaaaagagttgatgtttcaatatatgacattgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tacacatggaggttattagaggtggtaaaagagttgatgtttcaatatatgacattgttg 251

                                                                       
Query: 121 ttggagatgttgttcctctcaacattggtgaccaggtacctgctgatggaattttaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttggagatgttgttcctctcaacattggtgaccaggtacctgctgatggaattttaatta 191

                                                                       
Query: 181 ctggtcactctcttgccattgatgaatctagcatgaccggagaaagcaagattgttcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ctggtcactctcttgccattgatgaatctagcatgaccggagaaagcaagattgttcaca 131

                                                                       
Query: 241 agaattccaaggcaccatttctaatgtctggctgcaaagtggcggatggtagtggcacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 agaattccaaggcaccatttctaatgtctggctgcaaagtggcggatggtagtggcacta 71

                
Query: 301 tgctg 305
           |||||
Sbjct: 70  tgctg 66