Jatropha Genome Database
- JcCB0982161.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0982161.10 + phase: 0 /partial
(405 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c05837 718 0.0
KJC_c03168 105 8e-23
KJC_c06446 70 4e-12
KJC_c02448 60 4e-09
KJC_c03906 50 4e-06
>KJC_c05837
Length = 885
Score = 718 bits (362), Expect = 0.0
Identities = 390/394 (98%), Gaps = 4/394 (1%)
Strand = Plus / Minus
Query: 2 cagatccagatgctgaagtgatagctttatcgccaaagactctattagccacaaa-tcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 848 cagatccagatgctgaagtgatagctttatcgccaaagactctattagccacaaaatcgt 789
Query: 61 tttgtgtgcgagatctgcaacaaaggcttccaacgggaccagaacctccaacttcaccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tttgtgtgcgagatctgcaacaaaggcttccaacgggaccagaacctccaacttcaccgc 729
Query: 121 cgcggacataatttaccgtggaagctaaagcagcgaaccagtaaggaaccacgcaagcgg 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cgcggacataatt-accgtggaagctaaagcagcgaaccagtaaggaaccacgcaagcgg 670
Query: 181 gtctacgtttgcccagaaaaatcttgtgttcaccataatccagctagagctctgggcgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gtctacgtttgcccagaaaaatcttgtgttcaccataatccagctagagctctgggcgac 610
Query: 241 ctcaccggaatcaagaagcacttttgcaggaagcacggggagaagaagtggaagtgtgag 300
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 609 ctcac-ggaatcaagaagcacttt-gcaggaagcacggggagaagaagtggaagtgtgag 552
Query: 301 cggtgctcgaagaaatatgcagtacaatccgattggaaggcccacatgaaaacttgtgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cggtgctcgaagaaatatgcagtacaatccgattggaaggcccacatgaaaacttgtgga 492
Query: 361 actagagagtataaatgcgattgcggcactttgt 394
||||||||||||||||||||||||||||||||||
Sbjct: 491 actagagagtataaatgcgattgcggcactttgt 458
>KJC_c03168
Length = 846
Score = 105 bits (53), Expect = 8e-23
Identities = 149/181 (82%)
Strand = Plus / Plus
Query: 203 cttgtgttcaccataatccagctagagctctgggcgacctcaccggaatcaagaagcact 262
|||||||||| || ||||| |||||||| | ||||| || || || || |||||||| |
Sbjct: 78 cttgtgttcatcacgatccatctagagctttaggcgatcttacagggataaagaagcatt 137
Query: 263 tttgcaggaagcacggggagaagaagtggaagtgtgagcggtgctcgaagaaatatgcag 322
|||||||||| ||||| |||||||||||||| || || ||| ||||||||||||||||
Sbjct: 138 tttgcaggaaacacggcgagaagaagtggaaatgcgataagtgttcgaagaaatatgcag 197
Query: 323 tacaatccgattggaaggcccacatgaaaacttgtggaactagagagtataaatgcgatt 382
| || || |||||||| || ||| |||| |||||| ||||| || |||||||||||||
Sbjct: 198 ttcagtctgattggaaagctcactccaaaatttgtggcactagggaatataaatgcgatt 257
Query: 383 g 383
|
Sbjct: 258 g 258
>KJC_c06446
Length = 815
Score = 69.9 bits (35), Expect = 4e-12
Identities = 102/123 (82%), Gaps = 1/123 (0%)
Strand = Plus / Minus
Query: 247 ggaatcaagaagcacttttgcaggaagcacggggagaagaagt-ggaagtgtgagcggtg 305
||||||||||||||||||||||| ||||| || |||||||||| |||| ||||| |||
Sbjct: 328 ggaatcaagaagcacttttgcagaaagcatggtgagaagaagtgggaaatgtgataagtg 269
Query: 306 ctcgaagaaatatgcagtacaatccgattggaaggcccacatgaaaacttgtggaactag 365
||| |||| ||||| || ||||| |||||||| || ||| ||||| ||||| |||||
Sbjct: 268 ctcaaagaggtatgcggttcaatcagattggaaagctcactccaaaacatgtggcactag 209
Query: 366 aga 368
|||
Sbjct: 208 aga 206
>KJC_c02448
Length = 719
Score = 60.0 bits (30), Expect = 4e-09
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 226 agagctctgggcgacctcaccggaatcaagaagcacttttgcaggaagcacggggagaag 285
|||||||| || ||||| || |||||||| || ||||| |||| ||||| || ||||||
Sbjct: 519 agagctctaggagaccttacaggaatcaaaaacaactttagcagaaagcatggtgagaag 460
Query: 286 aagtggaagtgtga 299
||||||||||||||
Sbjct: 459 aagtggaagtgtga 446
>KJC_c03906
Length = 556
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 349 aaaacttgtggaactagagagtata 373
|||||||||||||||||||||||||
Sbjct: 266 aaaacttgtggaactagagagtata 242