Jatropha Genome Database

JcCB0969631.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0969631.10 + phase: 1 /partial
         (216 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03564                                                            412   e-115
KJC_c01682                                                             78   9e-15
KJC_c01204                                                             78   9e-15

>KJC_c03564 
          Length = 947

 Score =  412 bits (208), Expect = e-115
 Identities = 215/216 (99%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattgaagatgaaaatgctgctgtaatgcctgaaaataaattggaaaagaagttcggac 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaattgaagatgaaa-tgctgctgtaatgcctgaaaataaattggaaaagaagttcggac 449

                                                                       
Query: 61  aatctccggtctttgttgcatcaactcttctagaggatggtggttcactgaaaggtgcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aatctccggtctttgttgcatcaactcttctagaggatggtggttcactgaaaggtgcga 389

                                                                       
Query: 121 gccctgcatctttgcttaaagaagccatccatgttattagctgtggctatgaagataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gccctgcatctttgcttaaagaagccatccatgttattagctgtggctatgaagataaaa 329

                                               
Query: 181 cagaatggggtaaagaggttggatggatttatggtt 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 328 cagaatggggtaaagaggttggatggatttatggtt 293


>KJC_c01682 
          Length = 1341

 Score = 77.8 bits (39), Expect = 9e-15
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                       
Query: 138 aaagaagccatccatgttattagctgtggctatgaagataaaacagaatggggtaaagag 197
           ||||||||||| ||||| ||||| ||||| |||||||| || ||||||||||| ||||||
Sbjct: 414 aaagaagccattcatgtaattagttgtggatatgaagacaagacagaatggggcaaagag 355

                      
Query: 198 gttggatggat 208
            ||||||||||
Sbjct: 354 attggatggat 344


>KJC_c01204 
          Length = 825

 Score = 77.8 bits (39), Expect = 9e-15
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 140 agaagccatccatgttattagctgtggctatgaagataaaacagaatggggtaaagaggt 199
           |||||||||||| ||||| |||||||| |||||||||||||| |||||||| || || ||
Sbjct: 245 agaagccatccaggttatcagctgtggttatgaagataaaacggaatggggaaaggaagt 304

                          
Query: 200 tggatggatttatgg 214
           ||| ||||| |||||
Sbjct: 305 tggctggatatatgg 319