Jatropha Genome Database

JcCB0902911.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0902911.10 - phase: 1 /partial
         (303 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06652                                                            416   e-116

>KJC_c06652 
          Length = 509

 Score =  416 bits (210), Expect = e-116
 Identities = 217/218 (99%), Gaps = 1/218 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   aggttaaatggctgctgaagctttcacaaattgctgaagtcattgaggtccccaacttta 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 aggttaaatggctgctgaagctttcacaaattgctgaagtcattgaggtccccaacttta 168

                                                                       
Query: 67  gtgaagaagctcagtctttcttgcaaggattgattgatgggtttagcttggatgatgcct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gtgaagaagctcagtctttcttgcaaggattgattgatgggtttagcttggatgatgcct 228

                                                                       
Query: 127 tggaggttaagaacattgagaaagtgacgaatcatgacgtaaaagcagtggaatacttct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tggaggttaagaacattgagaaagtgacgaatcatgacgtaaaagcagtggaatacttct 288

                                                 
Query: 187 tgaaaaagaaatgccaatctcacccagagattgctaag 224
           |||||||||||||||||||||| |||||||||||||||
Sbjct: 289 tgaaaaagaaatgccaatctca-ccagagattgctaag 325



 Score =  141 bits (71), Expect = 1e-33
 Identities = 78/79 (98%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                       
Query: 225 tctgaggatatcaacaatctggcccatgcattaatgctgaaaagagtcaatgaacaaggt 284
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 356 tctgaggatatcaacaatctggcccatgcattaatgctg-aaagagtcaatgaacaaggt 414

                              
Query: 285 tatgtttcctgtaatggat 303
           |||||||||||||||||||
Sbjct: 415 tatgtttcctgtaatggat 433