Jatropha Genome Database

JcCB0902641.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0902641.10 - phase: 0 /pseudo/partial
         (312 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09605                                                            347   1e-95

>KJC_c09605 
          Length = 685

 Score =  347 bits (175), Expect = 1e-95
 Identities = 182/183 (99%), Gaps = 1/183 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   aggatcttcaagatgcattggctcatcgtgataaagagctcgctgagagagatgcagcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aggatcttcaagatgcattggctcatcgtgataaagagctcgctgagagagatgcagcac 361

                                                                       
Query: 65  tgaacaattccaagaagcagattaagagcatagaaataaaacttgattctgccaatgctc 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 360 tgaacaattccaagaagcagattaagagcatag-aataaaacttgattctgccaatgctc 302

                                                                       
Query: 125 gccaccaattagagaaagaagcatgggaaaccaaccttcagaacttggaagaatcgtgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gccaccaattagagaaagaagcatgggaaaccaaccttcagaacttggaagaatcgtgga 242

              
Query: 185 aat 187
           |||
Sbjct: 241 aat 239