Jatropha Genome Database
- JcCB0894111.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0894111.10 - phase: 2 /partial
(702 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c03168 555 e-158
KJC_c11433 62 2e-09
>KJC_c03168
Length = 846
Score = 555 bits (280), Expect = e-158
Identities = 314/331 (94%)
Strand = Plus / Plus
Query: 1 catcacacatagagccttttgtgatgctttagcggaggagagcgccagagccactcagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 catcacacatagagccttttgtgatgctttagcggaggagagcgccagagccactcagac 348
Query: 61 tcctaatccaaatccggctgccgtgaacctgaatccaaatcaagaatccgaacctaaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tcctaatccaaatccggctgccgtgaacctgaatccaaatcaagaatccgaacctaaggt 408
Query: 121 acaagttgacccatctnnnnnnnnnnnnnnnnntcctccactagcacctgtagctgcagc 180
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 409 acaagttgacccatctccgccgccgccgccgcctcctccactagcacctgtagctgcagc 468
Query: 181 ccctgctcctccagctcagtcagctggtgtaatatcttcctctatttcgcctaatcatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ccctgctcctccagctcagtcagctggtgtaatatcttcctctatttcgcctaatcatag 528
Query: 241 tccagagttgccagataatccctctccaattatagaagaagcgctggcgccccaatccgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tccagagttgccagataatccctctccaattatagaagaagcgctggcgccccaatccgc 588
Query: 301 attggctactgcaggattaaatggtagctct 331
|||||||||||||||||||||||||||||||
Sbjct: 589 attggctactgcaggattaaatggtagctct 619
Score = 343 bits (173), Expect = 3e-94
Identities = 180/181 (99%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 376 tgtctttgctagtttatttgcttcatcaactgcgtctggaagcatacagcctcctcaaac 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgtctttgctagtttatttgcttcatcaactgcgtctggaagcatacagcctcctcaaac 723
Query: 436 tcctgcatttactgacctaattcgagctatggctcaccctgatcgtccagccgaccttgc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tcctgcatttactgacctaattcgagctatggctcaccctgatcgtccagccgaccttgc 783
Query: 496 tccaccatcatctactgaacccatttctctctgtct-ctccaccagtcatggatcatcaa 554
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 784 tccaccatcatctactgaacccatttctctctgtctcctccaccagtcatggatcatcaa 843
Query: 555 t 555
|
Sbjct: 844 t 844
>KJC_c11433
Length = 326
Score = 61.9 bits (31), Expect = 2e-09
Identities = 45/47 (95%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 656 gctgctacaaatgcatcattacttcgtggatttggaattgtatcttc 702
|||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 1 gctgctacaa-tgcatcattacttcgtgga-ttggaattgtatcttc 45