Jatropha Genome Database

JcCB0888501.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0888501.10 + phase: 0 /pseudo/partial
         (185 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05664                                                            260   1e-69

>KJC_c05664 
          Length = 646

 Score =  260 bits (131), Expect = 1e-69
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                       
Query: 55  actgatttagacaaagaagataagggaaagatcagtaaaggtgagataagggatgcgctt 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 actgatttagacaaagaagataagggaaagatcagtaaaggtgagataagggatgcgctt 428

                                                                       
Query: 115 gttcacatgggagtagaaatgggtatccctccttttaaagaatttcctctcctaaatgac 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gttcacatgggagtagaaatgggtatccctccttttaaagaatttcctctcctaaatgac 368

                      
Query: 175 atcttaaagaa 185
           |||||||||||
Sbjct: 367 atcttaaagaa 357



 Score = 77.8 bits (39), Expect = 8e-15
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 1   agcaatggataagctcaatgaatatcttactgccatcgaccgatgaattgaaag 54
           |||||||||||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 635 agcaatggataagctcaatgaatatcttactgccagtcnccgatgaattgaaag 582