Jatropha Genome Database

JcCB0836821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0836821.10 + phase: 0 
         (348 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03827                                                            605   e-173

>KJC_c03827 
          Length = 715

 Score =  605 bits (305), Expect = e-173
 Identities = 312/313 (99%), Gaps = 1/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 20  ggtatttggaggatgatgatactcccataaagaaaacaatcaaaggtgctactatgggtt 79
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 715 ggtatttggaggatgatgatactcccataaagaaa-caatcaaaggtgctactatgggtt 657

                                                                       
Query: 80  tagttgctggaactatctgggggactgttgttgccacttggtatgacgttcctcgtgttg 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tagttgctggaactatctgggggactgttgttgccacttggtatgacgttcctcgtgttg 597

                                                                       
Query: 140 agaaacatgttgcacttccagggctaataaggaccgtcaagatgatgggtaactatggtg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 agaaacatgttgcacttccagggctaataaggaccgtcaagatgatgggtaactatggtg 537

                                                                       
Query: 200 caacttttgcagctattggaggagtttacattggagtcgagcagctggttcaacattaca 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 caacttttgcagctattggaggagtttacattggagtcgagcagctggttcaacattaca 477

                                                                       
Query: 260 ggatgaagagagattttgtcaatggagctgttggtggctttgttgcaggggcttcaattc 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggatgaagagagattttgtcaatggagctgttggtggctttgttgcaggggcttcaattc 417

                        
Query: 320 tggggttcaaagg 332
           |||||||||||||
Sbjct: 416 tggggttcaaagg 404