Jatropha Genome Database

JcCB0824821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0824821.10 - phase: 2 /partial
         (407 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00388                                                            682   0.0  

>KJC_c00388 
          Length = 1622

 Score =  682 bits (344), Expect = 0.0
 Identities = 354/356 (99%), Gaps = 1/356 (0%)
 Strand = Plus / Minus

                                                                       
Query: 53  aggctggtggattggtgtttggaatactgtaaaacccaagatggtcacatgaatccaaaa 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aggctggtggattggtgtttggaatactgtaaaacccaagatggtcacatgaatccaaaa 304

                                                                       
Query: 113 gcacatcgagttttctattctggatgtcaggccatcatgtatgtgctttgcttccgtatg 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcacatcgagttttctattctggatgtcaggccatcatgtatgtgctttgcttccgtatg 244

                                                                       
Query: 173 aggtcgataatggatgttcctgggctcaaatcacatcttctcctcaaacctatggagctc 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aggtcgataatggatgttcctgggctcaaatcacatcttctcctcaaacctatggagctc 184

                                                                       
Query: 233 atcttgaaacataaattagaccctttgaaggtttgcctgccatctatagtagaagagttt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atcttgaaacataaattagaccctttgaaggtttgcctgccatctatagtagaagagttt 124

                                                                       
Query: 293 ctcaaacaggcaaaagctgctcatttgttcaccacgcctgaaacattcatttctgaagat 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ctcaaacaggcaaaagctgctcatttgttcaccacgcctgaaacattcatttctgaagat 64

                                                                   
Query: 353 ttgctggaatctgaattttccaggga-gtttggggggcttgagagactggacatgt 407
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 63  ttgctggaatctgaattttccagggaggttgggggggcttgagagactggacatgt 8