Jatropha Genome Database

JcCB0813641.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0813641.10 + phase: 0 /pseudo/partial
         (498 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02950                                                             82   1e-15

>KJC_c02950 
          Length = 869

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 409 catgcaagtgttaggacacctaatctgaaggcacgcctaaatacattccgtgaagaattt 468
           ||||||||| |||| ||||||||| |||||||||| || || ||||||||||| ||||| 
Sbjct: 749 catgcaagttttagaacacctaatttgaaggcacgactgaacacattccgtgaggaattc 808

                                        
Query: 469 cgtgcagtgtggcgcaattatagtgagct 497
           ||||| || ||||| ||||| ||||||||
Sbjct: 809 cgtgctgtttggcgtaattacagtgagct 837



 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 154 tttgcagctactttcagtgagaaggtgacaagaactgtaagaaagttctctccacatttg 213
           |||||||  ||||| ||||||||||| ||||||||||||||  | |||||||| ||||| 
Sbjct: 493 tttgcaggcacttttagtgagaaggtaacaagaactgtaaggcaattctctcctcattta 552

                                                    
Query: 214 gcagcaaagatgaggcctcctcacatgcctgttattcgtgg 254
           || || |||||||| |||||||  |  ||||||||||||||
Sbjct: 553 gctgctaagatgagacctcctctaacacctgttattcgtgg 593