Jatropha Genome Database

JcCB0762671.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0762671.10 - phase: 0 /partial
         (248 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00918                                                            242   3e-64

>KJC_c00918 
          Length = 1137

 Score =  242 bits (122), Expect = 3e-64
 Identities = 129/130 (99%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   aggtcatttggtcaaaagatcttgcaacaagctcacctgtgccatggtacttgcccttgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aggtcatttggtcaaaagatcttgcaacaagctcacctgtgccatggtacttgcccttgg 216

                                                                       
Query: 65  acaaaaatcacttttctttcagtagcttccgattaacagctcttgggagg-ttttcacaa 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 215 acaaaaatcacttttctttcagtagcttccgattaacagctcttgggaggtttttcacaa 156

                     
Query: 124 aaaacatggt 133
           ||||||||||
Sbjct: 155 aaaacatggt 146



 Score =  143 bits (72), Expect = 2e-34
 Identities = 86/88 (97%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                       
Query: 162 ggtgaaggccctagaattttgtgggacttgctccaaagggaagtcaaagggttcaagatt 221
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 ggtgaaggccctagaattt-gtgggacttgctccaaagggaagtcaaagggttcaagatt 90

                                       
Query: 222 ttctggagaaagctgcag-gggattagt 248
           |||||||||||||||||| |||||||||
Sbjct: 89  ttctggagaaagctgcagagggattagt 62