Jatropha Genome Database

JcCB0759831.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0759831.10 + phase: 0 /pseudo/partial
         (228 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00779                                                            361   e-100
KJC_s13773                                                            204   6e-53
KJC_s15809                                                            111   7e-25

>KJC_c00779 
          Length = 1289

 Score =  361 bits (182), Expect = e-100
 Identities = 182/182 (100%)
 Strand = Plus / Plus

                                                                       
Query: 26  ggaaaggtgctccaacaactcctttggtcacaatagcagtgacaaagctggtagctggtg 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggaaaggtgctccaacaactcctttggtcacaatagcagtgacaaagctggtagctggtg 377

                                                                       
Query: 86  tgttggagaggaacaacttaccacctgcaattttcacatcattttgtggtggtgttgaca 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgttggagaggaacaacttaccacctgcaattttcacatcattttgtggtggtgttgaca 437

                                                                       
Query: 146 ttggtgaagcaatatcaaaagacacacgcattcctctggtttctttcacggggagttcaa 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttggtgaagcaatatcaaaagacacacgcattcctctggtttctttcacggggagttcaa 497

             
Query: 206 ag 207
           ||
Sbjct: 498 ag 499


>KJC_s13773 
          Length = 159

 Score =  204 bits (103), Expect = 6e-53
 Identities = 117/119 (98%), Gaps = 2/119 (1%)
 Strand = Plus / Minus

                                                                       
Query: 26  ggaaaggtgctccaacaactcctttggtcacaatagcagtgacaaagctggtagctggtg 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ggaaaggtgctccaacaactcctttggtcacaatagcagtgacaaagctggtagctggtg 58

                                                                      
Query: 86  tgttggagaggaacaacttaccacctgcaattttcacatcattttgtggtggtgttgac 144
           |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 57  tgttggagaggaacaacttaccacctgcaa-tttcacatca-tttgtggtggtgttgac 1


>KJC_s15809 
          Length = 486

 Score =  111 bits (56), Expect = 7e-25
 Identities = 84/91 (92%), Gaps = 3/91 (3%)
 Strand = Plus / Minus

                                                                       
Query: 112 gcaattttcacatcattttgtggt-ggtgttgacattggtgaagcaatatcaaaagacac 170
           |||||||  ||||||||||||||| |||||||||||||||||||||||||||||  ||||
Sbjct: 486 gcaatttctacatcattttgtggttggtgttgacattggtgaagcaatatcaaagaacac 427

                                          
Query: 171 acgcattcctctggtttc--tttcacgggga 199
           ||||||||||||||||||  |||||||||||
Sbjct: 426 acgcattcctctggtttcgttttcacgggga 396