Jatropha Genome Database

JcCB0757411.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0757411.10 + phase: 1 /pseudo/partial
         (411 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10874                                                            624   e-179

>KJC_c10874 
          Length = 617

 Score =  624 bits (315), Expect = e-179
 Identities = 377/398 (94%), Gaps = 21/398 (5%)
 Strand = Plus / Minus

                                                                       
Query: 16  ctgagaatggaacaaata-ctgggagacgacttctagaagatgataactccaaggagtct 74
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 617 ctgagaatggaacaaataactgggagacgacttctagaagatgataa-tccaaggagtct 559

                                                                       
Query: 75  caggaaagtagttcagattccaaagagaataacaatgaggatgatcatgcggcaactgtg 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caggaaagtagttcagattccaaagagaataacaatgaggatgatcatgcggcaactgtg 499

                                                                       
Query: 135 gaaa-tgatgaaggtttggatgcagatgcggatacctcttttgagttattccgtgataat 193
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaaaatgatgaaggtttggatgcagatgcggatacctcttttgagttattccgtgataat 439

                                                                       
Query: 194 gaggagctgggtgatgaatatagttatgactatgatgattatgtcgatgaatccttgtgg 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaggagctgggtgatgaatatagttatgactatgatgattatgtcgatgaatccttgtgg 379

                                                                       
Query: 254 ggaggagaggagtggactgaagaacaacatgagaaatcggaggattatgtgaacatagat 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggaggagaggagtggactgaagaacaacatgagaaatcggaggattatgtgaacatagat 319

                                                                       
Query: 314 tcgcacatcctgtgcacccctgtgagtgtagaccttactatcatagaagatattgataac 373
           |||||||||||||||||||                  |||||||||||||||||||||||
Sbjct: 318 tcgcacatcctgtgcaccc------------------ctatcatagaagatattgataac 277

                                                 
Query: 374 gatgggatttcagaaatgattgttgctgtttcatattt 411
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gatgggatttcagaaatgattgttgctgtttcatattt 239