Jatropha Genome Database

JcCB0747201.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0747201.10 - phase: 2 /partial
         (329 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04134                                                            468   e-132

>KJC_c04134 
          Length = 748

 Score =  468 bits (236), Expect = e-132
 Identities = 277/288 (96%), Gaps = 7/288 (2%)
 Strand = Plus / Plus

                                                                       
Query: 44  tttgtttatcggaagaagaaatatattgactgcactggaatgacattcagggactttatg 103
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 4   tttgtttatcggaagaagaaatatattgatcgcactggaatgacattcagggactttatg 63

                                                                       
Query: 104 gctggaaaacttccttgcattccgggtgaactgccaacccttaatgattgggagaatcac 163
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  gctggaaa-cttccttgcattccgggtgaactgccaacccttaatgattgggagaatcac 122

                                                                       
Query: 164 ttaacaacaattttccctgaggtcagactgaagcgatacttggaaatgaggggtgctgat 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttaacaacaattttccctgaggtcagactgaagcgatacttggaaatgaggggtgctgat 182

                                                                       
Query: 224 ggagggccttggaggaggttgtgtgcattgccagcatttt-----ggatta-tatacgat 277
           ||||||||||||||||||||||||||||||||||||||||     |||||| ||||||||
Sbjct: 183 ggagggccttggaggaggttgtgtgcattgccagcattttgggtaggattattatacgat 242

                                                           
Query: 278 gaaatctcgcttcaacatgttctggacatggtagctgattggactcct 325
           ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 243 gaaatctcgtttcaacatgttcttgacatggtagctgattggactcct 290