Jatropha Genome Database

JcCB0740621.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0740621.10 - phase: 0 
         (249 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00209                                                             66   4e-11

>KJC_c00209 
          Length = 1134

 Score = 65.9 bits (33), Expect = 4e-11
 Identities = 120/149 (80%)
 Strand = Plus / Plus

                                                                       
Query: 25  gatgataaacagttctttatagaccatcctggtgctgtacccattactgcagttcaggga 84
           |||||||| || ||||| ||||| || |||||||| || ||||| ||  ||| |||||| 
Sbjct: 532 gatgataagcaattcttcatagatcaccctggtgcagtgcccatcaccacagctcagggg 591

                                                                       
Query: 85  gaggaactgaggaagctgattaatgcacctgcttatatcgaatgcagttcgaaaacacag 144
           ||||||||||| ||||| |||   || |||| ||| || || || ||||| ||||| |||
Sbjct: 592 gaggaactgagaaagctaattggagctcctgtttacattgagtgtagttctaaaactcag 651

                                        
Query: 145 cagaatgtgaagggagttttcgatgcagc 173
           ||||||||||| | ||| || ||||||||
Sbjct: 652 cagaatgtgaaagcagtctttgatgcagc 680